DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and abcx-1

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_495321.3 Gene:abcx-1 / 183860 WormBaseID:WBGene00006522 Length:710 Species:Caenorhabditis elegans


Alignment Length:625 Identity:129/625 - (20%)
Similarity:239/625 - (38%) Gaps:123/625 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQAR 174
            |..:.|:.......::||:|.:..:...:||..:.  ..:.::...||..|:||..:....::..
 Worm    97 KQEVHNISFELSSSDVLAIMYTKESETISLLKIIC--GIKDVRGKLSGDILVNGHRMSRDRLEKT 159

  Fly   175 CAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVK 239
            ..:|..:.. ..:|:.|::|........|....|......:::::.:|.|......|      ..
 Worm   160 IGFVSLESP-TSTLSVRQYLHVHGNFYPPMTERYGGVGHLINKLMTDLGLFPVSDII------CS 217

  Fly   240 GLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQK-GKTVILTIHQPSSE 303
            .|:..:.:|:..||:.:.||.:|:|.:....:|......::..|::.:.| .:.||:.|...|.:
 Worm   218 RLNRSQWQRVKVASQLVRDPTILVCSDIFKDIDVHDQCFLIDYLREWAVKTNRIVIMAISPTSLQ 282

  Fly   304 LFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLA---VVPGREIESRD 365
            :..:|.|.:::|.||:.:.|.|.....:|..:|..||...|..|:||.::.   :......||..
 Worm   283 ILNMFSKAMILASGRMIYFGPPKSMQQYFETIGCPCPPYKNVCDYYVDLVTHDNLTSDASRESSV 347

  Fly   366 RIAKICDNFAISKVARDMEQLLATKNLEKPLEQPENGYTYKATWFMQFRAVLWRSWLSVLKEPLL 430
            |||::.:.:  ::.|..:.:..:.|.|   |:.|..|.      ||....::...|.:.:..   
 Worm   348 RIARLVNKW--NQTAPPVRRTASGKFL---LDLPTAGI------FMNLLTLISLFWFNFINN--- 398

  Fly   431 VKVRLIQTTMVAILIGLIF-----LGQQLTQVGV------MNING---------AIFLFLTNM-- 473
                  :.:.:..|: .||     |...|:.:.:      :|.|.         .:|:.|.|:  
 Worm   399 ------RASRIFFLL-FIFSLSTCLSLHLSDLSLTLPDAFLNRNSYLELLIFYVPLFIGLVNLKK 456

  Fly   474 -TFQNVFATINVFTSELPVFMREARSRLYR----------CD--TYFLGKTIAELPLFLTVPLVF 525
             ||.:.|....:|.|        ||..|..          |.  :..:...:.|||..|...:||
 Worm   457 CTFLSEFDKFYLFIS--------ARHHLKELLKLSPLKNMCSSLSIIIVSFVVELPFLLITSMVF 513

  Fly   526 TAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMA------LSVGPPVIIPF 584
               |.||     .:...|:..:...|.:.||.|..:.|:.  |.|.:.      ||..|.....|
 Worm   514 ---AMPM-----SIFTDFHQKSSNHLTSLVSISSSFFINL--SVTQLVVNSVSNLSSEPLSFFFF 568

  Fly   585 LL--FGGFFLNSGSVPVY--LKWLSYL-----SWFRYANEGLLINQWADVEPGEISCTSSNTTCP 640
            ::  |..||......|::  ||:.:.|     |.||:..|.         .|......|.|.:.|
 Worm   569 VISWFSLFFACGFPFPIHSILKYFNPLFFPTTSVFRFLYED---------SPSLYPQLSVNLSTP 624

  Fly   641 ----SSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAY 676
                |.|:..|.|...:.        |....:.||.:|:|
 Worm   625 IQLYSCGRTFLNTTQVTR--------GPCQKVSSFELLSY 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 129/625 (21%)
abcx-1NP_495321.3 P-loop_NTPase 102..302 CDD:304359 40/208 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.