DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and abch-1

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_495320.1 Gene:abch-1 / 174078 WormBaseID:WBGene00016973 Length:595 Species:Caenorhabditis elegans


Alignment Length:651 Identity:144/651 - (22%)
Similarity:264/651 - (40%) Gaps:133/651 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 TRGLFCNERHIPAPRKHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMR 159
            :.|.:.::.:.|.....:|||:...|..||:.|::|.:.:||||||.||.    .|......|:.
 Worm    19 SNGTWFSKIYKPPSVFQILKNISFTATSGEIHAIVGVADSGKTTLLEALT----SGAGGDIGGIA 79

  Fly   160 LLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSL 224
            :|:...:..:.....|:::...:.:..||:.|..|.:.|.:    .|:.......:|..|.||| 
 Worm    80 MLDKFMLTRRRFNKFCSHINYRNQYPSSLSVRSLLYYHARL----CLSSTHTSLEIDHRISELS- 139

  Fly   225 SKCQHTIIG-VPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQ 288
              ....:|| ...:::.||...|:|:....|.|.||.|.|.|:||:.|...:|:.::..|...:.
 Worm   140 --AMFDVIGYAHDKLEDLSFSARRRVMTVMELLKDPILTIIDDPTAYLSPLSAYQLIYALHFYAA 202

  Fly   289 K-GKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQV 352
            | .:.:|:|:....|:|..|......:..|.||:.|......:.|...|.:||.|.|||.:|:.:
 Worm   203 KFNRIIIITLRNVRSDLSHLLGSATCLFYGEVAYSGQMRLLPNHFKKAGFECPPNENPAAYYLSL 267

  Fly   353 LAVVPGRE-----IESRDRIAKICDNFAISKVARDMEQLLATKN---LEKPLEQPENGYTYKATW 409
            |.:  .:|     :|::::..|:......:..:.|:....||..   |:...:.|.         
 Worm   268 LTI--DKESMQKVMETQEKATKLVAFRTDNDTSSDISGSSATGTGVLLDSGRKNPS--------- 321

  Fly   410 FMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFL---- 470
            .....|:|:|..||           ||.:|....|.|||          ...:..|:..||    
 Worm   322 ISTVAAILFRRVLS-----------LIGSTPSNSLAGLI----------AFPVTAAVLSFLRPTS 365

  Fly   471 --TNMTFQNVFATINVFTSELPVFMREARSRL--YR-----CDT--------YFLGKTIAELPLF 518
              :::.|..:...:.:....:.:|...:::.|  :|     |.|        :||..:..:..||
 Worm   366 LPSSLFFWKLLTFLYLLLQTIVIFPNYSKTSLLSFRECNLYCQTTSLTIFSIFFLVYSCIQSSLF 430

  Fly   519 LTVPL-VFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVII 582
            :.:.| .|.:.|...|.|...:|..|: .::.|:.|.      ||.:|::.           ||:
 Worm   431 VGIVLWSFKSEAMFQISLNLFLLSIFS-FSIFTICAR------YLKNCSNI-----------VIL 477

  Fly   583 PFLLFGGFFLN---------SGSVPVYLKWLSYLSWFRYANEGL--LINQWADVEPGEISCTSSN 636
            ..::...||::         |.|:..|   :..::.|.|:|..|  |::...|.|    .||..:
 Worm   478 QTIIILAFFVSGNGVTGTTTSSSIQYY---IGVINPFNYSNFLLSKLLSSSIDNE----ECTFPS 535

  Fly   637 TTCPSSGKVILETLNFSAADLPLDY--------------VGLAILIVSFRV-LAYLALRLRARRK 686
            ..|..|       :|..:...|..|              :.|..|::||.: |...:::|:...|
 Worm   536 YMCKLS-------MNLHSDLYPPWYAPNDVFTNFAILFCLSLTFLVISFFIHLTEPSVQLKKHMK 593

  Fly   687 E 687
            :
 Worm   594 Q 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 143/649 (22%)
abch-1NP_495320.1 P-loop_NTPase 18..238 CDD:393306 60/229 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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