DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment w and abcg8

DIOPT Version :9

Sequence 1:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster
Sequence 2:NP_001108041.2 Gene:abcg8 / 100136850 ZFINID:ZDB-GENE-050517-41 Length:684 Species:Danio rerio


Alignment Length:662 Identity:188/662 - (28%)
Similarity:326/662 - (49%) Gaps:58/662 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SPPEDS------GSGSGQL-AENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPR 109
            ||.|||      ..|..:| ..||.|     ::..|...|   |.:.::..:..:  |.|  :.:
Zfish    38 SPEEDSSLYFTYSGGRNELEVRNLNY-----EVDTAAQIP---WYEKLSEFKMPW--EMH--SNK 90

  Fly   110 KHLLKNVCGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQAR 174
            :.::|::....:.|::|||:||||.|||:||:.:..|...|..  .||..|:||:|.....::..
Zfish    91 QTVIKDLNLHVHSGQMLAVIGSSGCGKTSLLDIITCRDEGGSM--NSGEILINGKPSTRSLVKKS 153

  Fly   175 CAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVK 239
            .|:|:|||..:..||.||.|.|.|.:|:|.:.:.:||..|||.||.||.|.:|.||.:| ...|:
Zfish   154 IAHVRQDDRLLPHLTVRETLAFVAKLRLPANFSQKQRDQRVDDVIAELRLRQCAHTRVG-NEYVR 217

  Fly   240 GLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSEL 304
            |:|||||:|::.|.:.|.:|.:||.|||||||||||||::|..|.:|::..:.|:|::|||.|::
Zfish   218 GVSGGERRRVSIAVQLLWNPGILILDEPTSGLDSFTAHNLVITLYRLARGNRLVLLSVHQPRSDI 282

  Fly   305 FELFDKILLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLAV---VPGREIESRDR 366
            |:|||.::|::.|...:.|...:.|.:|:.:|..||...||:|:||.::::   .|.:|.:..::
Zfish   283 FQLFDLVVLLSSGSAVYCGQAKDMVSYFTTLGYPCPRYCNPSDYYVDLISIDRRTPEKEAQCLEK 347

  Fly   367 IAKICDNFAISKVARDMEQLLATKNLEKP-LEQPEN----------------------GYTYKAT 408
            .:.:...| :.||..:.:.:..::....| ||.|::                      |..:   
Zfish   348 ASMLAAQF-LEKVKNNEDFMWKSEVCGPPALEAPQSSVPSVSMKESVITVSKQKDQLPGKVH--- 408

  Fly   409 WFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNM 473
               ||..::.|...:..::.:.:.|..::..::::|||.::.|.....:.:.:....:::.....
Zfish   409 ---QFTTLIRRQVFNDYRDLVTLVVHGLEALLMSLLIGFLYFGCTEEGLSIQDTVALLYMIGALT 470

  Fly   474 TFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAG 538
            .|..|...|....||..:...|....:|....||..|.:.|||......||:....|.:.||...
Zfish   471 PFAVVLDVIAKCHSERAMLYHELEDGMYSVTPYFFAKVLGELPEHCAFTLVYGVPIYWLAGLNVA 535

  Fly   539 VLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKW 603
            ...|.....||.|....|.|....::.|..:...:..:|..:...|.|..||.::..::.:...|
Zfish   536 PDRFLLNFLLVWLTVYCSRSMALFVAAALPTLQTSSFMGNALFTVFYLTAGFVISLENMWMVASW 600

  Fly   604 LSYLSWFRYANEGLLINQWADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVGLAILI 668
            .||:|:.|:..||:|..|:...   .|..|..|.|....|..::|.:..:...|...|:.|..:.
Zfish   601 FSYISFMRWGFEGMLQVQFRGT---RIPITIGNLTVEFDGIKVVEMMKMNQYPLFSCYLVLIAVS 662

  Fly   669 VSFRVLAYLALR 680
            :.|.:|.||:|:
Zfish   663 LVFILLYYLSLK 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wNP_476787.1 3a01204 68..687 CDD:273361 180/639 (28%)
abcg8NP_001108041.2 3a01204 47..674 CDD:273361 182/651 (28%)
ABCG_White 72..301 CDD:213201 95/238 (40%)
ABC2_membrane 413..617 CDD:279410 44/203 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574375
Domainoid 1 1.000 119 1.000 Domainoid score I5779
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100076
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.750

Return to query results.
Submit another query.