DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm50 and ctdspl3

DIOPT Version :9

Sequence 1:NP_001303557.1 Gene:ttm50 / 31266 FlyBaseID:FBgn0250874 Length:428 Species:Drosophila melanogaster
Sequence 2:XP_021335375.1 Gene:ctdspl3 / 571337 ZFINID:ZDB-GENE-141215-56 Length:360 Species:Danio rerio


Alignment Length:238 Identity:67/238 - (28%)
Similarity:105/238 - (44%) Gaps:32/238 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 FGKPEVDPNGQPIEDEFTHKPLVQQYLQRMWKSIHYYQRMIQEPSRAKLLPDPLKPPYVQPRYTL 231
            ||.....|..:..|:|....|..      ..|:|....:..:..|..:.:|...:.   .|..||
Zfish   129 FGYSAASPLSEDEENEEVFSPFT------FIKNIPNRSQQSRPVSAVRDIPPKTRS---TPAATL 184

  Fly   232 VLEMKDVLVH------PDWTYQTGWRFKK---------RPGVDHFLAECAKDFEIVVFTAEQGMT 281
            ||::.:.||.      ||..|....||:.         ||.|..||....|.||:.|:|:.:...
Zfish   185 VLDLDETLVFSSLNVIPDAEYTFNTRFQDHKYKVYVILRPHVREFLQAMTKHFEMFVYTSAKKEY 249

  Fly   282 VFPILDALDPNGYIM-YRLVRDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGL 345
            ...|:|.||||..:. :||.:|....|.||::|:|..|.|||.|.:::|...:....|..|...:
Zfish   250 AEKIVDILDPNKKLFRHRLYQDDCACVLGHYIKDLTILERDLSKTVILDNAPHTFPYHLMNMIPI 314

  Fly   346 ARWHGNDDDGQLLDLIAFLKIIAQNNVDDVREVL-----HYYR 383
            ..|.|:.:|.:|..||.:::.:.  :.||.|.||     |::|
Zfish   315 KSWIGDQEDRELQKLIPYMEKLV--HADDFRNVLKKRTDHFHR 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm50NP_001303557.1 CPDc 227..355 CDD:214729 46/143 (32%)
ctdspl3XP_021335375.1 Atrophin-1 <19..182 CDD:331285 11/61 (18%)
NIF 183..343 CDD:308590 51/161 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5190
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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