DRSC/TRiP Functional Genomics Resources

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Protein Alignment ttm50 and Ctdspl2

DIOPT Version :10

Sequence 1:NP_570027.1 Gene:ttm50 / 31266 FlyBaseID:FBgn0250874 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_001014070.3 Gene:Ctdspl2 / 311368 RGDID:1309219 Length:465 Species:Rattus norvegicus


Alignment Length:395 Identity:89/395 - (22%)
Similarity:153/395 - (38%) Gaps:66/395 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 STPRL-------LTHIHQHRALGNHYHHYHQHYQHQHHLLHHQQQYLRLFTCTALPAAAPALFSI 75
            ||||.       |:.:.:...:......|....||     ..|...|....|:..|.....|.:|
  Rat    85 STPRTGEKPDKQLSRVRRKSPVNGEAGSYEMTNQH-----IKQNGKLEDNPCSGSPPRTTLLGTI 144

  Fly    76 LHTARGYSSTTKQEAGATGPNDAPEVAPNAPLLAKLFPQTSPEVDSNAEQERKKREEEEEKENER 140
            ......:.|...:. |.:| :|:|..|                    .|.|...::.:.|:.:|.
  Rat   145 FSPVFNFFSPANKN-GTSG-SDSPGQA--------------------VEAEEIVKQLDMEQVDEI 187

  Fly   141 AWKRMKLGFAIFGGSAVAA------GFWAVYEFGKPEVDPNGQPIEDEFTHKPL-VQQYLQRMWK 198
            .........|.:...||..      |.....|....::.|...|:..|..:... .:...:..|:
  Rat   188 TTSTTSANGAAYSNQAVQVRPSLNNGLEEAEETVTRDIPPLTAPVAPESGYSSAHAEATYEEDWE 252

  Fly   199 SI--HYYQRMIQEPSRAKLLPDPLKPPYVQ--PRYTLVLEMKDVLVH-----------------P 242
            ..  :|:.:.:...:..:|...|..|...:  |.::|||::.:.|||                 .
  Rat   253 VFDPYYFIKHVPPLTEEQLNRKPALPLKTRSTPEFSLVLDLDETLVHCSLNELEDAALTFPVLFQ 317

  Fly   243 DWTYQTGWRFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIM-YRLVRDATHF 306
            |..||...|.  ||....||...::.:||::|||.:.:....:|:.|||...:: :||.|:....
  Rat   318 DVIYQVYVRL--RPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFREHCVC 380

  Fly   307 VDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHGNDDDGQLLDLIAFLKIIAQNN 371
            |.|:::|:|:.|.|||.|.|::|....|......|...:..|..:.:|.:||.||.||:.:.:.|
  Rat   381 VQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIPFLEKLVELN 445

  Fly   372 VDDVR 376
             :|||
  Rat   446 -EDVR 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ttm50NP_570027.1 CPDc 227..355 CDD:214729 41/145 (28%)
Ctdspl2NP_001014070.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..133 11/52 (21%)
HIF-SF_euk 286..447 CDD:274055 48/163 (29%)

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