DRSC/TRiP Functional Genomics Resources

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Protein Alignment dwg and Gtf3a

DIOPT Version :9

Sequence 1:NP_477338.3 Gene:dwg / 31265 FlyBaseID:FBgn0000520 Length:592 Species:Drosophila melanogaster
Sequence 2:NP_001107042.1 Gene:Gtf3a / 246299 RGDID:619746 Length:363 Species:Rattus norvegicus


Alignment Length:287 Identity:80/287 - (27%)
Similarity:128/287 - (44%) Gaps:51/287 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 FLEESLDSAPPTAGEALP--YVCTV--CQKAFRQQCRLNQHMRSHVDEKQYEC--EECGKRLKHL 345
            |:...:..|||.  .|||  ::|:.  |..::.:..:|:.|:..|..|:.:.|  |.|||..  :
  Rat    20 FVRACVGPAPPR--PALPSRFICSFPDCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAF--I 80

  Fly   346 RNY--KEHMLTHTNVKPHQCSI--CGRFYRTTSSLAVH-KRTHAE-KKPYNC--DQCGRGYAAFD 402
            |:|  ..|:|.||..||..|:.  |.:.:.|.|:|..| :|.|.. :|.|.|  :.|.:.:....
  Rat    81 RDYHLSRHILIHTGEKPFVCADNGCNQKFSTKSNLKKHIERKHENPQKQYVCNFEGCKKAFKKHQ 145

  Fly   403 HLRRHKLTHTGERPYAC--DLCDKAYYDSSSLRQHKISHTG------------------------ 441
            .||.|:..||.|..:.|  :.|.|.:...|.|::|...|.|                        
  Rat   146 QLRTHQCQHTNEPLFRCTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFVGKTWTELLKHTREA 210

  Fly   442 -KKAFTCEICGVGLSQKSGYKKHMMVHSGVK-AHKC--DVCGHAFTFTSNLNAHV-RLHSGEKPF 501
             |:..||.:|.....:|...|:||..|:..: .::|  :.|...:|...||.:|: ..|..::||
  Rat   211 HKEEVTCTVCQKMFKRKDHLKQHMKTHAPERDVYRCPREGCARTYTTVFNLQSHILSFHEEKRPF 275

  Fly   502 KCE--VCVKAFPTKKRLASHMRVHNKE 526
            .||  .|.|.|..|:.|..|..||:.:
  Rat   276 VCEHAGCGKTFAMKQSLMRHSVVHDPD 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dwgNP_477338.3 zf-AD 14..91 CDD:214871
COG5048 <297..451 CDD:227381 52/194 (27%)
C2H2 Zn finger 307..327 CDD:275368 4/21 (19%)
C2H2 Zn finger 335..355 CDD:275368 9/23 (39%)
C2H2 Zn finger 363..383 CDD:275368 7/22 (32%)
COG5048 <387..523 CDD:227381 44/170 (26%)
C2H2 Zn finger 391..411 CDD:275368 5/21 (24%)
zf-H2C2_2 403..426 CDD:290200 9/24 (38%)
C2H2 Zn finger 419..439 CDD:275368 6/21 (29%)
C2H2 Zn finger 447..467 CDD:275368 6/19 (32%)
C2H2 Zn finger 475..495 CDD:275368 6/22 (27%)
zf-H2C2_2 487..510 CDD:290200 10/25 (40%)
C2H2 Zn finger 503..523 CDD:275368 8/21 (38%)
Gtf3aNP_001107042.1 zinc finger 40..62 4/21 (19%)
C2H2 Zn finger 43..62 CDD:275368 3/18 (17%)
COG5048 <62..185 CDD:227381 39/124 (31%)
zinc finger 70..92 9/23 (39%)
C2H2 Zn finger 70..92 CDD:275368 9/23 (39%)
zinc finger 100..123 7/22 (32%)
C2H2 Zn finger 100..123 CDD:275368 7/22 (32%)
zinc finger 132..154 5/21 (24%)
C2H2 Zn finger 135..154 CDD:275368 4/18 (22%)
zinc finger 162..184 6/21 (29%)
C2H2 Zn finger 162..184 CDD:275368 6/21 (29%)
zinc finger 189..211 0/21 (0%)
zf-C2H2 216..237 CDD:395048 7/20 (35%)
zinc finger 217..237 6/19 (32%)
C2H2 Zn finger 217..237 CDD:275368 6/19 (32%)
SFP1 <243..295 CDD:227516 16/51 (31%)
zinc finger 246..269 6/22 (27%)
C2H2 Zn finger 246..269 CDD:275368 6/22 (27%)
zinc finger 277..299 8/21 (38%)
C2H2 Zn finger 277..299 CDD:275368 8/21 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 301..363 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343826
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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