DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dwg and prdm10

DIOPT Version :9

Sequence 1:NP_477338.3 Gene:dwg / 31265 FlyBaseID:FBgn0000520 Length:592 Species:Drosophila melanogaster
Sequence 2:XP_031760739.1 Gene:prdm10 / 100216084 XenbaseID:XB-GENE-985864 Length:1178 Species:Xenopus tropicalis


Alignment Length:602 Identity:122/602 - (20%)
Similarity:215/602 - (35%) Gaps:146/602 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 FEPQD----------GAAMPQHICLHCL---QLLEQAFNFKRMVIDSDELL-------------R 91
            |:|.|          .:..|:|..||.:   .:|.:|.....:|:..|..|             :
 Frog   209 FDPNDLWCEECNNAHPSVCPKHGALHPIPNRPVLTRARASLPLVLYIDRFLGGVYSKRRIPKRTQ 273

  Fly    92 LGLDE---ARCSSFHESQTH------SPNQSQQHDQQQQAFDSTEEYVMIEML------NEEQEN 141
            .|..|   .:.:...:|..|      ||..|:...|:...|:.:||.:...|:      |..::|
 Frog   274 FGPLEGPLVKKTELKDSYIHLKVALNSPVDSEGAFQEDLWFELSEESLCNWMMFVRPAQNHLEQN 338

  Fly   142 --------------VANLD---------------------EELAEEDRRIFAMTVDEEEEFLTEE 171
                          :.|::                     .::.:|:|::..   ::|:.:...|
 Frog   339 LVAYQYGQHIYFTTIKNIEPKQELKVWYAASYAEFVNEKIHDITQEERKVLR---EQEKNWPCYE 400

  Fly   172 VDQDDELSEEEHQLAQSGDQQEEHIT-------MESVHEFQPAE--------VEYVTIKNEFETI 221
            .::....||:..|...|.|::.:.|:       ..:..:|.|..        :.:.......|.|
 Frog   401 CNRRFMSSEQLQQHLNSHDEKLDFISRTKPRGRTRTRRKFGPGRRPGRPPKFLRFDISSENREKI 465

  Fly   222 VTEEDEFEVMNDSGAHDAILDCQMIVIPAEGAIDEVIGEETLELEGDGREEHLLPEAE------- 279
            .....:....::.|.|  ..||....:......:..:|..|.......:...|||..|       
 Frog   466 DLGTQDLLQFHNKGPH--FEDCGHSTLNGLEQSELTLGTSTQGTPNQQQATQLLPPNEISTPVAT 528

  Fly   280 -DVCEDED-------------------FLEESLDSAPPTAGEALPYVCTVCQKAFRQQCRLNQHM 324
             .:...||                   |:.:|.          .|:.|..|.||||::.:|:||:
 Frog   529 TSILTAEDMRRAKRIRLELQNAALQHLFIRKSF----------RPFKCLQCGKAFREKEKLDQHL 583

  Fly   325 RSHVDEKQY--ECEECGKRLKHLRNYKEHMLTHTNVKPHQCSICGRFYRTTSSLAVHKRTHAEKK 387
            |.|..:..|  .|:.|.|......:.:.||..|.:.|.:.|..|...:.....|..|...|....
 Frog   584 RFHGRDGNYPLTCDICNKGFISTSSLENHMKFHLDQKTYSCIFCPESFDRLDLLKDHVVVHIIDG 648

  Fly   388 PYNCDQCGRGYAAFDHLRRHKLTHTGERPYACDLCDKAYYDSSSLRQHKISHTGKKAFTCEICGV 452
            .::|..|.:.:..|..:::|..:...|:.|.|..||||:.....||.|.:.|:.:|.|.|..||.
 Frog   649 CFSCPTCKKRFTDFIQVKKHVRSFHSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGK 713

  Fly   453 GLSQKSGYKKHMM-VHSGVK-AHKCDVCGHAFTFTSNLNAHVRLHSGEKP---FKCEVCVKAFPT 512
            ...:|...::||. :|:..: |.|.|..|.|..|..      ||.|.:..   |||.||:..|..
 Frog   714 QFKRKDKLREHMQRMHNPEREAKKADRTGRAKAFKP------RLASTDYESFMFKCRVCMMGFRR 772

  Fly   513 KKRLASHMRVHNKESPV 529
            :..|.:|:...:.|..:
 Frog   773 RGMLVNHLSKRHPEMKI 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dwgNP_477338.3 zf-AD 14..91 CDD:214871 12/63 (19%)
COG5048 <297..451 CDD:227381 43/155 (28%)
C2H2 Zn finger 307..327 CDD:275368 10/19 (53%)
C2H2 Zn finger 335..355 CDD:275368 5/19 (26%)
C2H2 Zn finger 363..383 CDD:275368 4/19 (21%)
COG5048 <387..523 CDD:227381 41/140 (29%)
C2H2 Zn finger 391..411 CDD:275368 4/19 (21%)
zf-H2C2_2 403..426 CDD:290200 7/22 (32%)
C2H2 Zn finger 419..439 CDD:275368 8/19 (42%)
C2H2 Zn finger 447..467 CDD:275368 6/20 (30%)
C2H2 Zn finger 475..495 CDD:275368 5/19 (26%)
zf-H2C2_2 487..510 CDD:290200 8/25 (32%)
C2H2 Zn finger 503..523 CDD:275368 6/19 (32%)
prdm10XP_031760739.1 PR-SET_PRDM10 244..375 CDD:380971 19/130 (15%)
Tristanin_u2 427..544 CDD:406931 16/118 (14%)
C2H2 Zn finger 566..586 CDD:275368 10/19 (53%)
C2H2 Zn finger 596..616 CDD:275368 5/19 (26%)
C2H2 Zn finger 624..644 CDD:275368 4/19 (21%)
COG5048 649..>716 CDD:227381 20/66 (30%)
C2H2 Zn finger 652..672 CDD:275368 4/19 (21%)
zf-C2H2 678..700 CDD:395048 9/21 (43%)
C2H2 Zn finger 680..700 CDD:275368 8/19 (42%)
C2H2 Zn finger 708..729 CDD:275368 6/20 (30%)
C2H2 Zn finger 763..784 CDD:275368 6/20 (30%)
SP1-4_N <900..1132 CDD:425404
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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