DRSC/TRiP Functional Genomics Resources

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Protein Alignment dwg and gtf3ab

DIOPT Version :9

Sequence 1:NP_477338.3 Gene:dwg / 31265 FlyBaseID:FBgn0000520 Length:592 Species:Drosophila melanogaster
Sequence 2:NP_001083013.2 Gene:gtf3ab / 100037394 ZFINID:ZDB-GENE-030131-7698 Length:318 Species:Danio rerio


Alignment Length:331 Identity:84/331 - (25%)
Similarity:124/331 - (37%) Gaps:76/331 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   305 YVCTV--CQKAFRQQCRLNQHMRSHVDEKQYECEECGKRLKHLRNYKEHMLTHTNVKPHQCSI-- 365
            :.||.  |:..|.:..:|..|...|...|.:.|.:|.|..........|.|:|:..||:.||:  
Zfish    12 FTCTFADCKATFSKLWKLEVHYCRHTGLKPFACGDCEKTFCTRYQLTRHQLSHSGEKPYLCSVSG 76

  Fly   366 CGRFYRTTSSLAVH-KRTHAEK-KPYNCDQ--CGRGYAAFDHLRRHKLTHTGERPYACD--LCDK 424
            |...:.|..||..| .:.|..| :.|.|:.  |.:.:.....|:.|...||.|..:.||  .|:.
Zfish    77 CSAAFSTPGSLRNHIAQVHDNKVRHYVCNYQGCAKEFHKKKQLKTHLCEHTNELSFKCDHEKCNN 141

  Fly   425 AYYDSSSLRQHKISHTGKKAFTC--EICGVGLSQKSGYKKH------------------------ 463
            .:....:|::|:..|.|   :.|  |.|....:..|.|.||                        
Zfish   142 KFASPKALKRHRKLHEG---YPCGEENCNFKGNTWSEYLKHRRTAHRVNLPCNQCKKVFHKVCFL 203

  Fly   464 ----MMVHSGV-KAHKC--DVCGHAFTFTSNLNAHV-RLHSGEKPFKCEV--CVKAFPTKKRLAS 518
                ..||||. :..||  :.|..::|...||..|| ..|.|::.|.|..  |.|||..::.|..
Zfish   204 QMHKKFVHSGERRMFKCTREGCQKSYTRRFNLENHVLDFHEGKRDFTCHFTGCDKAFAMEESLKR 268

  Fly   519 HMRVH--NKESPVTATVAVQSINPPSRQAGAEGATGGGATGGSPTGGGATGGSATNLHITEVHEQ 581
            |..||  .|..|....|      .|.|:..::..|...|                  .::| |.|
Zfish   269 HFVVHMPQKTKPQKPKV------KPKRKKTSKAKTSDAA------------------KLSE-HLQ 308

  Fly   582 PVSTSK 587
            .||.:|
Zfish   309 KVSLTK 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dwgNP_477338.3 zf-AD 14..91 CDD:214871
COG5048 <297..451 CDD:227381 42/157 (27%)
C2H2 Zn finger 307..327 CDD:275368 6/21 (29%)
C2H2 Zn finger 335..355 CDD:275368 5/19 (26%)
C2H2 Zn finger 363..383 CDD:275368 7/22 (32%)
COG5048 <387..523 CDD:227381 44/175 (25%)
C2H2 Zn finger 391..411 CDD:275368 4/21 (19%)
zf-H2C2_2 403..426 CDD:290200 8/24 (33%)
C2H2 Zn finger 419..439 CDD:275368 5/21 (24%)
C2H2 Zn finger 447..467 CDD:275368 7/49 (14%)
C2H2 Zn finger 475..495 CDD:275368 7/22 (32%)
zf-H2C2_2 487..510 CDD:290200 10/25 (40%)
C2H2 Zn finger 503..523 CDD:275368 7/21 (33%)
gtf3abNP_001083013.2 C2H2 Zn finger 18..36 CDD:275368 4/17 (24%)
COG5048 40..>180 CDD:227381 39/142 (27%)
C2H2 Zn finger 44..64 CDD:275368 5/19 (26%)
C2H2 Zn finger 72..91 CDD:275368 6/18 (33%)
C2H2 Zn finger 134..156 CDD:275368 5/21 (24%)
C2H2 Zn finger 161..182 CDD:275368 7/20 (35%)
C2H2 Zn finger 190..211 CDD:275368 0/20 (0%)
C2H2 Zn finger 220..243 CDD:275368 7/22 (32%)
C2H2 Zn finger 251..273 CDD:275368 7/21 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170584083
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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