DRSC/TRiP Functional Genomics Resources

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Protein Alignment fs(1)Yb and Tdrd12

DIOPT Version :10

Sequence 1:NP_477494.2 Gene:fs(1)Yb / 31262 FlyBaseID:FBgn0000928 Length:1042 Species:Drosophila melanogaster
Sequence 2:NP_001355316.1 Gene:Tdrd12 / 71981 MGIID:1919231 Length:1277 Species:Mus musculus


Alignment Length:355 Identity:74/355 - (20%)
Similarity:126/355 - (35%) Gaps:99/355 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 GEQLGVVSSKPEGMMTPMIRVS--PPSTPVRRLLRKLDEQIRNRD------------SDTAPEHS 324
            |.|.|...:||    .|.:..:  ||.|.:..|..:..|.:..:.            ....|:.:
Mouse   436 GPQEGSRGTKP----PPAVSTTKIPPVTNIFPLPERFCEALEMKGIKWPQTQRGMMVERPCPKGT 496

  Fly   325 DAAQAY----EWDEYNPPQKDDSISDRH----IQTMTDISDQLMNIDDDFAEHF-GT------SS 374
            ....:|    ....:||...|.|....|    :.......:...::.::.|:|. ||      ||
Mouse   497 RGTASYLCMASTGTWNPKGPDLSNCTSHWVNQLAQKIRSGENAASLANELAKHTKGTVFAGDVSS 561

  Fly   375 AIRLIEESKSHLRVVLKALEESDSNIPQLSNFELIARSNLRQVDEALKIQS------GNQPSFLE 433
            ::||:|:....|...|:.|:.|:.:....|..:.|..:    ||..|:.::      .|......
Mouse   562 SVRLMEQLVDILDAQLQELKPSEKDSAGRSYNKAIVDT----VDNLLRAETLDCWKHMNSSEQAH 622

  Fly   434 TST-LQDLRSEWA-----NLYESIR--SPFARIMHQVKKFAATLQEVSSMASLGDVDIRSKEDVA 490
            |:| |.|...|.|     ||.|..|  .|...|          :.||:.:::.|.|     :|..
Mouse   623 TATMLLDTLEEGAFVLADNLLEPTRVSMPTDNI----------VLEVAVLSTEGQV-----QDFT 672

  Fly   491 KTL---DAVTAIERRLSSERQELRDLLASSSF---RDVAKDLSCEFESVSEGYDDAVDKIGKMAH 549
            ..|   .|.::|:...::.:|..|:.||...|   |.:...||.|..:|..|    .|.:|    
Mouse   673 FHLGFKGAFSSIQLSANTVKQNSRNGLAKVVFIIYRSLGPFLSTENATVKLG----ADLLG---- 729

  Fly   550 SLSQVKGEWDAWNSRQNDIRNAMVRIESHL 579
                               ||:.:.:.||:
Mouse   730 -------------------RNSTIAVNSHV 740

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fs(1)YbNP_477494.2 Tudor_SF <862..960 CDD:470623
Tdrd12NP_001355316.1 Tudor_TDRD12_rpt1 4..165 CDD:410505
DEAD-like_helicase_N 396..601 CDD:475120 33/172 (19%)
SrmB <507..810 CDD:440279 61/280 (22%)
Tudor_TDRD12_rpt2 863..985 CDD:410506
alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins. 1138..1242 CDD:469641
Blue background indicates that the domain is not in the aligned region.

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