DRSC/TRiP Functional Genomics Resources

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Protein Alignment fs(1)Yb and ddx-46

DIOPT Version :9

Sequence 1:NP_477494.2 Gene:fs(1)Yb / 31262 FlyBaseID:FBgn0000928 Length:1042 Species:Drosophila melanogaster
Sequence 2:NP_001033411.1 Gene:ddx-46 / 176943 WormBaseID:WBGene00018776 Length:970 Species:Caenorhabditis elegans


Alignment Length:666 Identity:115/666 - (17%)
Similarity:221/666 - (33%) Gaps:234/666 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 KWLSISARNAEMLVITPCDEENEK----------EGKGETEPEIVQQRMPLKV------------ 176
            ||.:...:....|.....||::||          |.:.:.:.|.:.:..|:|:            
 Worm   111 KWRAQKKKEELDLQSEQSDEKSEKKPWNLEDEDDEDEFDIKNEGISEENPVKMEEKVEKMDTDDE 175

  Fly   177 -DALNSMQLYEIKENTPPTSSEDYKAEADVLLSAATPATIPNDNK---EQEINLSVEDATVKLLA 237
             |.|::.......:|...|.:...||...|        ||..:.|   |:...|..||....::.
 Worm   176 EDPLDAFMKEIATKNAKKTGNSTQKASGIV--------TIVQEEKPEPEKGQVLENEDNMDMVID 232

  Fly   238 SFELGSTDSAAVDESSPAAAKFNAPVYSPFVTENPTKSLDAEFQELVKSFKVQNVFKNMNLPPPP 302
            .|::.:..::...:....|...::.||               :::..|:|.::.           
 Worm   233 DFDIETAAASLCHKGRMLAQTDHSKVY---------------YRKFKKNFYIET----------- 271

  Fly   303 SVSIEE--PVSSASASDYRHQIDTTSLDSIRTVKDSPASLAVVPFSAGGITYNNYGVLGWSRHAV 365
                ||  .::.|....||.::|:.::..|    |.|..:..                 |::..|
 Worm   272 ----EEIRRMTKAEVKAYREELDSITVKGI----DCPKPIKT-----------------WAQCGV 311

  Fly   366 VPCYGLTEAPDISTIIRRAMQQMGVAR----SRARAVQRFAWPHVSLGKSVLVVGNLQIGKTWSY 426
                              .::.|.|.:    |:..::|..|.|.:..|:.|:.:.....|||.::
 Worm   312 ------------------NLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAF 358

  Fly   427 LPTVCQRSHEDLQRRPDV--GRGPTCIFVCPNQGQG----KQIERWMSTL----LCLLGSASGFE 481
            |..:.:.    :..:|::  |.||..:.:.|.:...    |:..::...|    .|..|.....|
 Worm   359 LLPMFRH----ILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISE 419

  Fly   482 DVVTHWDKTQLVDIVRRLKKPVGILLTSVDLLLQLLNHNPVGSIFDAQAVKCIALDNLNDMVRVL 546
                     |:.|    ||:...|::.:...::.:|..|. |.:.:.:.|..:.||..:.|..  
 Worm   420 ---------QIAD----LKRGAEIVVCTPGRMIDVLAANS-GKVTNLRRVTYLVLDEADRMFD-- 468

  Fly   547 PNDTMKLLQRLPEMFQLTQNKCQLLVSGRIWHTDLMVQHILPLMPD-VLVLFDDALEASVYGGVQ 610
                 |..:  |::.::..|                      :.|| ..|||    .|:....::
 Worm   469 -----KGFE--PQIMKVVNN----------------------IRPDKQTVLF----SATFPRHME 500

  Fly   611 LDVRVVADEPEKIEHLKALIAERRNFANEPAVMVCSNSTEVLLLRRSLQAIGVNAHICVSEACYS 675
            ...|.|.|:|.:|     |:..:.        :|||:.|:             ||.||.....:.
 Worm   501 ALARKVLDKPVEI-----LVGGKS--------VVCSDITQ-------------NAVICAEHQKFL 539

  Fly   676 NVAEWL---RQSPSGLLLV-----TDDVVPRL---------------------------KCGKIP 705
            .:.|.|   .:..|.::.|     .||:|.:|                           |.|.|.
 Worm   540 KLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIK 604

  Fly   706 LLIHYSFASMWARFKN 721
            :|:..|.|:.....||
 Worm   605 VLVATSVAARGLDVKN 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fs(1)YbNP_477494.2 TUDOR <859..948 CDD:278965
ddx-46NP_001033411.1 SrmB 276..793 CDD:223587 82/463 (18%)
DEADc 316..514 CDD:238167 48/255 (19%)
HELICc 534..655 CDD:238034 16/87 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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