DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2681 and Siah1

DIOPT Version :10

Sequence 1:NP_570022.2 Gene:CG2681 / 31258 FlyBaseID:FBgn0024997 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_543181.2 Gene:Siah1 / 140941 RGDID:620449 Length:282 Species:Rattus norvegicus


Alignment Length:231 Identity:65/231 - (28%)
Similarity:97/231 - (41%) Gaps:32/231 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 PSKPEKSPATPSEEGP----PTVSARHYEGLIEELRCPGCAGAMKAPILLCKSGHSVCEQCTRIL 234
            |:...|.|  ||:..|    .|.|......|.|   ||.|...:..|||.|:|||.||..|...|
  Rat    10 PTGTSKCP--PSQRVPALTGTTASNNDLASLFE---CPVCFDYVLPPILQCQSGHLVCSNCRPKL 69

  Fly   235 LMCPLCKEPFTNSRSLTVEALCAKAHFRCGHASGGCQVRMPVVLLPWHEQQCMYKPMKC-FMGRV 298
            ..||.|:.|..:.|:|.:|.:.....|.|.:||.||::.:|......||:.|.::|..| ..|  
  Rat    70 TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPG-- 132

  Fly   299 WGDCRWQGREVQWKEHLEEQH--------DDRLFRSSSADL----EWNLGTRRKPLTGYYVFQAH 351
             ..|:|||.......||..||        :|.:|.::..:|    :|   ...:...|::.....
  Rat   133 -ASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDW---VMMQSCFGFHFMLVL 193

  Fly   352 DEMFNFYEIHDRQRVLFTMTCTSNRRDSKYNFAYEV 387
            ::.    |.:|..:..|.:......|....||||.:
  Rat   194 EKQ----EKYDGHQQFFAIVQLIGTRKQAENFAYRL 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2681NP_570022.2 RING_Ubox 206..250 CDD:473075 19/43 (44%)
Sina 248..442 CDD:460824 37/153 (24%)
Siah1NP_543181.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22 5/13 (38%)
RING_Ubox 36..86 CDD:473075 21/52 (40%)
Sina 82..278 CDD:460824 37/154 (24%)
SBD. /evidence=ECO:0000250|UniProtKB:P61092 90..282 34/146 (23%)

Return to query results.
Submit another query.