DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2662 and scml2

DIOPT Version :9

Sequence 1:NP_001284832.1 Gene:CG2662 / 31254 FlyBaseID:FBgn0024993 Length:446 Species:Drosophila melanogaster
Sequence 2:XP_012812742.2 Gene:scml2 / 780057 XenbaseID:XB-GENE-6043728 Length:706 Species:Xenopus tropicalis


Alignment Length:604 Identity:114/604 - (18%)
Similarity:175/604 - (28%) Gaps:237/604 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 EESPVQPTTHNSSAGS--NGHDAKSPVVTTAPAATCSVSVSDASGAGASVRTTGRVKKPKQVYDP 72
            ::.|.:|:......|.  ...|.|:|.:      .|..::.|..|....:...|.    :..:|.
 Frog   142 KQEPQKPSQSFFKTGMKLEAVDKKNPYL------ICPATIGDVKGDDIFITFDGW----RGAFDY 196

  Fly    73 SDNYVSR-------ASSNRNSLS------SVPATSNV-QSPPVKEATDSQDSTTSPVSEQQQQQL 123
            ...|.||       .|...:||.      |:|.||:. .:.|:|....|..|...||..|:.::.
 Frog   197 WCKYDSRDIFPIGWCSLTGDSLQPPGNSVSLPRTSSTPTASPIKGVRRSMQSPQKPVQAQKGRKP 261

  Fly   124 QQAAQLRNFDTCQKCGKSEPKRGSGHKSNFL---------------------------------- 154
            .:       |.|.....:.|::|...|:..|                                  
 Frog   262 MR-------DKCLGQTSASPRKGKRPKNTTLSRNTPNAENQTKSKGTGLKPGRKKETLALNSSLP 319

  Fly   155 ---TCKGCMQKWHF-----------------PCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPG 199
               |..|...|...                 .|:.:..|..|...    .||.:..:|.:..|||
 Frog   320 PVNTSDGDSNKSQILKDGVGILGSPVAVISTVCVYVNKHGNSGPH----LDKKKVLQLPDHFGPG 380

  Fly   200 ------LSICSLCVD-AYHPDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSEEQTGARK 257
                  ......||| ||:          ||.|                   .|.......|...
 Frog   381 PVNVVLQQAVQACVDCAYY----------SKIV-------------------FSFLKSGHHGGEA 416

  Fly   258 STASREDQAQPV-VPRKSNAGRKKR--------------VQSEP-----TGQEKAAKIEKLAKRR 302
            .|||.:.:...| :|..::|....|              ..|:|     .|.......::....:
 Frog   417 ITASFDGEKHSVHLPPVNSASFVLRFLEKLCHSLQCDNLFSSQPFSPHMGGAHSPTDYDRSKTTK 481

  Fly   303 QPLKTEKKKEYKKEED--EEPAQIKVKVEKVEPVDMETEQIENNDLPGPE---QESLSLRLT--- 359
            :.:.....|.|.::..  ..|...|:...:|.|.:.|....|.|.:|..:   :||:...|.   
 Frog   482 EEITDRSNKRYCQDPPPFSAPLSPKLPRSEVHPPEAEMSPTEENCMPKDQRFSEESMDSALNTVN 546

  Fly   360 ---------------------------PITA------VERRSHPVS------------------- 372
                                       |:||      |.|||...|                   
 Frog   547 TASPATRNTTEYRNMGATSAYYRGSVQPVTATSNGAPVVRRSSSSSASNSCYYDSSRNRTQRRIE 611

  Fly   373 --------------------------TWSVEQVVQFVAKRYPK----EANVFRYQDIDGASLLLL 407
                                      ||||:.|:.||.:..|:    .|.:||..:|||.:||||
 Frog   612 AASSTTGPELHSTERQTTQSLSKDPATWSVDDVMCFVKEADPQALAPHAELFRRHEIDGTALLLL 676

  Fly   408 NRHDVMNGFGLKLGPALRV 426
            ....:|...||||||||::
 Frog   677 RSDMIMKYMGLKLGPALKL 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2662NP_001284832.1 PHD 134..187 CDD:214584 12/106 (11%)
PHD 189..236 CDD:214584 12/53 (23%)
SAM_Atherin-like 371..438 CDD:188982 28/105 (27%)
SAM 371..436 CDD:197735 28/105 (27%)
scml2XP_012812742.2 MBT 17..112 CDD:214723
MBT 123..221 CDD:214723 17/88 (19%)
RBR 255..316 CDD:407329 7/67 (10%)
SLED 350..459 CDD:403384 26/141 (18%)
SAM_Scm 633..704 CDD:188977 27/63 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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