Protein Alignment Lint-O and Phc2

DIOPT Version :10

• Sequence 1: NP_570018.1
• Gene: Lint-O / 31254
• FlyBaseID: FBgn0024993
• Length: 446
• Species: Drosophila melanogaster
• Sequence 2: NP_001013187.2
• Gene: Phc2 / 313038
• RGDID: 1307912
• Length: 850
• Species: Rattus norvegicus
• Alignment Length: 488
• Identity: 98/488 - (20%)
• Similarity: 170/488 - (34%)
• Gaps: 160/488 - (32%)

  Fly     6 DEDKEESPVQPTTHNSSAGSNGHD-------------AKSPVVTTAPAATCSVSVSDA------- 50
            |:.||..|.:.:...:..|.:.|.             .|||.:...||......:..|
  Rat   462 DDWKEVVPAEKSVPVTRPGLSPHQQAIITAIPGGLPGPKSPNIQQCPAHETGQGIVHALTDLSSP 526

  Fly    51 ---SGAGASVRT-------TGRVKKPKQVYDPS------DNYVSRASS-----NRNSLSSVPATS 94
               ||.|.|..:       .|..|.|:.:..|.      :.:|.:..:     .|:||.......
  Rat   527 GMTSGNGNSASSITGTAPQNGENKPPQAIVKPQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKK 591

  Fly    95 NVQSPPVKEATDSQDSTTSPVSEQQQQQLQQAAQ------LRNFDTCQKCGKSEPKRGSGHKSNF 153
            ......:.|....||.||:..||.::..||::.:      |:    |:.||:
  Rat   592 KYAQGFLPEKLPQQDHTTTTDSEMEEPYLQESKEEGTPLKLK----CELCGR------------- 639

  Fly   154 LTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGLSICSLCVDAYHPDCNDPT 218
                            :.|      ..|||..| |:|.:...:...:. |:..|..:|.|
  Rat   640 ----------------VDF------AYKFKRSK-RFCSMACAKRYNVG-CTKRVGLFHSD----- 675

  Fly   219 LKQSKAVEANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASREDQAQP--VVPRKSNAGRKKR 281
              :||..:|               |:|:.:....:.|...|.:::.:.||  .||....|..:.
  Rat   676 --RSKLQKA---------------GTTTHNRRRASKASLPTLTKDTKKQPSGTVPLSVTAALQL- 722

  Fly   282 VQSEPTGQEKAAKIEKLAKRRQPL-------KTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETE 339
                ...||.:::....:...:||       .|.::::.::                   |:|..
  Rat   723 ----AHSQEDSSRCSDNSSYEEPLSPISASSSTSRRRQGQR-------------------DLELS 764

  Fly   340 QIENNDLPGPEQESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYP---KEANVFRYQDIDG 401
            .:...||.|.....|.            |.| :.|:||.|.:|: :..|   :.|..||.|:|||
  Rat   765 DMHMRDLVGMGHHFLP------------SEP-TKWNVEDVYEFI-RSLPGCQEIAEEFRAQEIDG 815

  Fly   402 ASLLLLNRHDVMNGFGLKLGPALRVFELVMSLQ 434
            .:||||....:|:...:||||||:::..:..|:
  Rat   816 QALLLLKEDHLMSAMNIKLGPALKIYARISMLK 848

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lint-O	NP_570018.1	PHD	134..187	CDD:214584	7/52 (13%)
		PHD	189..236	CDD:214584	8/46 (17%)
		SAM_Atherin-like	371..438	CDD:188982	25/67 (37%)
Phc2	NP_001013187.2	Herpes_BLLF1	<141..559	CDD:282904	19/96 (20%)
		PHC2_SAM_assoc	662..781	CDD:465202	27/177 (15%)
		SAM_Ph1,2,3	781..849	CDD:188976	27/70 (39%)