DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2662 and Scml4

DIOPT Version :9

Sequence 1:NP_001284832.1 Gene:CG2662 / 31254 FlyBaseID:FBgn0024993 Length:446 Species:Drosophila melanogaster
Sequence 2:NP_001346193.1 Gene:Scml4 / 268297 MGIID:2446140 Length:490 Species:Mus musculus


Alignment Length:471 Identity:104/471 - (22%)
Similarity:154/471 - (32%) Gaps:153/471 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VQPTTHN---SSAGS---------NG----HDAKSPVVTTAPAATCSVSVSDASGAGASVRTTGR 62
            ||...||   :||.|         .|    :..||||:.| |.|                     
Mouse   103 VQMAVHNLYSASAASVPAVTIPKKRGRKPRYKIKSPVLMT-PLA--------------------- 145

  Fly    63 VKKPKQVYDPSDNYVSRASSNRNSLSSVPA-TSNVQSPPVKEATD-----SQDSTTSPVSEQQQQ 121
            :..|:...:|             .|||:|. .:.:.|..|.||..     ::.:...|..|:::.
Mouse   146 LSPPRSTPEP-------------DLSSIPQDAATIPSLVVPEALTVCLYINKQADVGPYLERRKL 197

  Fly   122 Q--------------LQQAAQLRNFDTCQKCGKSEPKR-----GSGHKSNFLTCKGCMQ-KWHFP 166
            |              ||||.|     .|..|. .:|:.     ..|::...::...... |.|..
Mouse   198 QQLPERLGPERPATVLQQAVQ-----ACIDCA-HQPRLVFSLVKQGYRGELVSVSASFDGKQHLR 256

  Fly   167 CLPITFHNQSTARKKFKCDKCRYCRLC-----NVRGPGLSICSLCVDAYHPDCNDPTLKQSKAVE 226
            .||:.  |......:|....|| ..||     ::..||    |:.......:..|...:.:|...
Mouse   257 SLPVV--NSVGYVLRFLTKLCR-SLLCDNLFSHLPFPG----SIGASDKAQEREDGRTESAKVAT 314

  Fly   227 ANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASR------EDQAQPVVPRKSNAGRKKRVQSE 285
            |.      .|.|..:|.:..|......|:...::|.      .|......|..:.:|  .|....
Mouse   315 AE------ECLANAVGMNRYAMDFSHRGSVTHSSSLYKRLTCGDSHLAGGPATTTSG--SRTNPV 371

  Fly   286 PTGQEKAAKIEKLAKRRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQIENND-LPGP 349
            |:|...:..:      |.|..:.|:                          ....||.|. .|.|
Mouse   372 PSGGSSSPGL------RLPASSPKR--------------------------NGTAIEGNRCAPSP 404

  Fly   350 EQESLSLRLTPITAVERRSHPVSTWSVEQVVQFVAKRYPK----EANVFRYQDIDGASLLLLNRH 410
            ..|....|       ...|...|||:||.||:||....|:    ...:||..:|||.:||||...
Mouse   405 SPEVQDTR-------RPSSRNPSTWTVEDVVRFVKDADPEALGPHVELFRKHEIDGNALLLLRSD 462

  Fly   411 DVMNGFGLKLGPALRV 426
            .:|...||||||||::
Mouse   463 MIMKYLGLKLGPALKL 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2662NP_001284832.1 PHD 134..187 CDD:214584 10/58 (17%)
PHD 189..236 CDD:214584 8/51 (16%)
SAM_Atherin-like 371..438 CDD:188982 28/60 (47%)
SAM 371..436 CDD:197735 28/60 (47%)
Scml4NP_001346193.1 RBR 83..142 CDD:319226 12/38 (32%)
SLED 177..285 CDD:314933 22/116 (19%)
SAM_Scm 416..487 CDD:188977 29/63 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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