DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2662 and Phc1

DIOPT Version :9

Sequence 1:NP_001284832.1 Gene:CG2662 / 31254 FlyBaseID:FBgn0024993 Length:446 Species:Drosophila melanogaster
Sequence 2:XP_006505561.1 Gene:Phc1 / 13619 MGIID:103248 Length:1040 Species:Mus musculus


Alignment Length:483 Identity:109/483 - (22%)
Similarity:164/483 - (33%) Gaps:152/483 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SPVQPTTHNSSAGSNGHDAKSPVVTTAPAATCSVSVSDASGAGASVRTTGRVKKPKQVYDPSDNY 76
            :|||.|.|   ....|..|.||||...|||....||.....|     .|..||:..:..:..|:.
Mouse   632 APVQGTAH---VVKGGPTASSPVVAQVPAAFYMQSVHLPGKA-----QTLAVKRKAESEEERDDL 688

  Fly    77 VSRASSNRNSLSSVPATSNVQSPPVKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFD-------- 133
            .:.|     |:....|:...:||.|.|..:|......||:...       |...|.|        
Mouse   689 SALA-----SVLPTKASPAAESPKVIEEKNSLGEKAEPVASLN-------ANPPNSDLVALAPTP 741

  Fly   134 ---------TCQKCGKSEPKRGSGHKSNFLT------------------CKGCMQKWHFPC---L 168
                     ..::.|.|:|.:.. .|...||                  |...:::...|.   |
Mouse   742 SAPPPTLALVSRQMGDSKPPQAI-VKPQILTHIIEGFVIQEGAEPFPVGCSQFLKETKKPLQAGL 805

  Fly   169 PITFHNQS-------------TARKKFKCDKCRYC-------------RLCNVRGPGLSICSLCV 207
            | |..|:|             ...||....||.||             |.|::         .|.
Mouse   806 P-TGLNESQPSGPLGGDSPSVELEKKANLLKCEYCGKYAPAEQFRGSKRFCSM---------TCA 860

  Fly   208 DAYHPDCNDP-TLKQSKAVEANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASREDQAQPVVP 271
            ..|:..|:.. .||:.|..|..               ..|.:...:.|.|:|::.        :.
Mouse   861 KRYNVSCSHQFRLKRKKMKEFQ---------------EASYARVRRRGPRRSSSD--------IA 902

  Fly   272 RKSNAGRKKRVQSEPT-GQEKAAKIEKLAKRRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVD 335
            |....|::.|.|.:.: |.:.::..|.|:                  ...|..:.|:..      
Mouse   903 RAKIQGKRHRGQEDSSRGSDNSSYDEALS------------------PTSPGPLSVRAG------ 943

  Fly   336 METEQIENNDLPGPEQESLSLRLTPITAVERRSHPVSTWSVEQVVQFVA--KRYPKEANVFRYQD 398
             ..|:...|.:..|....|.    .|..|...|:| |.||||:|.:|:|  :...:.|..||.|:
Mouse   944 -HGERDLGNTITTPSTPELQ----GINPVFLSSNP-SQWSVEEVYEFIASLQGCQEIAEEFRSQE 1002

  Fly   399 IDGASLLLLNRHDVMNGFGLKLGPALRV 426
            |||.:||||....:|:...:||||||::
Mouse  1003 IDGQALLLLKEEHLMSAMNIKLGPALKI 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2662NP_001284832.1 PHD 134..187 CDD:214584 15/86 (17%)
PHD 189..236 CDD:214584 11/60 (18%)
SAM_Atherin-like 371..438 CDD:188982 26/58 (45%)
SAM 371..436 CDD:197735 26/58 (45%)
Phc1XP_006505561.1 PHA03247 <509..639 CDD:223021 4/6 (67%)
PHC2_SAM_assoc 864..970 CDD:374673 24/157 (15%)
SAM_Ph1,2,3 971..1039 CDD:188976 28/61 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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