DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2662 and Samd11

DIOPT Version :9

Sequence 1:NP_001284832.1 Gene:CG2662 / 31254 FlyBaseID:FBgn0024993 Length:446 Species:Drosophila melanogaster
Sequence 2:XP_038965039.1 Gene:Samd11 / 102549710 RGDID:1310271 Length:844 Species:Rattus norvegicus


Alignment Length:457 Identity:98/457 - (21%)
Similarity:152/457 - (33%) Gaps:140/457 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GHDAKSPVVT----TAPAATCSVSVSDASGAGASVRTTGRVKKPKQVYDPSD-NYVSRASSNRNS 86
            ||..|..:|.    |.||||.|.|..:.|             :|..:..|.: .:::..|..|..
  Rat   426 GHRRKQGLVQHREGTVPAATTSFSERELS-------------QPPPLLPPQNAPHITMGSHLRPP 477

  Fly    87 LSSVPATSNVQSPPVKEATDSQDSTTSPVSEQQQQQLQQAAQLRNFDTCQKCGKSEPKRGSGHKS 151
            ...:| |:..|:|.......:|....:     :||:|.:...|...:..:...:.|  .||.|:.
  Rat   478 FFGMP-TALCQTPGYSFLPSAQAEMLA-----RQQELLRKQSLARLEMSELLRQKE--LGSVHRP 534

  Fly   152 NFLTCKGCMQKWHFPCLPITFHNQSTARKKFKCDKCRYCRLCNVRGPGL-----SICSLCVDAYH 211
            ..|..:..:   |.|..|.....                     ||..|     |...|.:....
  Rat   535 QLLAPEVAL---HIPEGPDELQR---------------------RGSMLVLKHGSAPLLALPPQG 575

  Fly   212 PDCNDPTLKQSKAVEANPNWRCFRCEACNIGGSTSASSEEQTGARKSTASREDQAQPVVPRK-SN 275
            |....|.                      |....||.|..|.|:..:.:     |||..|:: :.
  Rat   576 PPGPGPP----------------------IPAKESARSRSQKGSLGAAS-----AQPSEPKETTR 613

  Fly   276 AGRKKRVQSEPTGQEKAAKIEKLAKRRQPLKTEKKKEYKKEEDEEPAQIKVKVEKVEPVDMETEQ 340
            ||...:..||...::...:..::|..|....|             |:|:.....:.|...:    
  Rat   614 AGLWAQDVSEEPSKDSDGEDPEIAAARGGAST-------------PSQVPAGGTRAEGKGL---- 661

  Fly   341 IENNDLPGPEQESLSLRLTPITAVERRSH-----------------PVSTWSVEQVVQFVA--KR 386
            :..:.||.|    |.|.. |..||....|                 .::.|:|:.|..||.  ..
  Rat   662 LSGSTLPPP----LPLGF-PCGAVSPYFHTGTMGGLFTDEETTGPEDINKWTVDDVCNFVGGLSG 721

  Fly   387 YPKEANVFRYQDIDGASLLLLNRHDVMNGFGLKLGPALRV----------------FELVMSLQT 435
            ..:.|.|||.|.|||.:|.||....::|..||||||||::                |.:.:.:||
  Rat   722 CGEYARVFREQGIDGETLPLLTEEHLLNTMGLKLGPALKIRAQVAKRLGRVFYMASFPVALPVQT 786

  Fly   436 QS 437
            .|
  Rat   787 PS 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2662NP_001284832.1 PHD 134..187 CDD:214584 8/52 (15%)
PHD 189..236 CDD:214584 7/51 (14%)
SAM_Atherin-like 371..438 CDD:188982 29/85 (34%)
SAM 371..436 CDD:197735 27/82 (33%)
Samd11XP_038965039.1 SAND 113..185 CDD:396076
SAM_Samd7,11 704..771 CDD:188978 25/66 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.