DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spg7 and afg3l1p

DIOPT Version :9

Sequence 1:NP_570017.1 Gene:Spg7 / 31253 FlyBaseID:FBgn0024992 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001015906.1 Gene:afg3l1p / 548660 XenbaseID:XB-GENE-1014910 Length:778 Species:Xenopus tropicalis


Alignment Length:829 Identity:338/829 - (40%)
Similarity:469/829 - (56%) Gaps:127/829 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 IGRELS--LLQLSRRQVMQLQAEY----------KAIVGLIARSLQLTPKEVRLMHLRSLSST-A 83
            |||.:|  :.::|||  :::::.|          ::|...|.:|.:..|         .|||. .
 Frog     5 IGRLVSAGVFEVSRR--LRVRSLYGRAVLRECAGRSITTHICQSWRWNP---------CLSSVFC 58

  Fly    84 KPPTASDGKTEKHEQPEKGSAKAK-DDSSKEKKSAVAAEDGDKSSRAAGEEAASTPTSSSTIGE- 146
            |||...:...:|:|: :.||.||. :.:...|:.......|..::|..|.:..|........|: 
 Frog    59 KPPKGFEKYFQKNEK-DSGSGKASPEGTGNAKEEETKKTSGGHNNRRDGNKEESAWWRRLQKGDF 122

  Fly   147 PGEDPNKNSNENDEKMRSVLTKAVLWLFTIYMFVAFFSLLITPRSERPEGSTRYVSWNEFVHHML 211
            |.:|       .|.:..::|...:...|      .||.|       |..|  |.::|.||||..|
 Frog   123 PWDD-------KDFRNLAILAAGIASGF------LFFYL-------RDPG--REINWKEFVHLYL 165

  Fly   212 AVGEVKELIIRPDMEMVTIILHEGAVIKGRKVSSTIFHMAVADANKFEEKLRDVEKRLGIKDG-- 274
            |.|.|..|.: .:.:.|.:|...|.      .|.......:...:.||..|.:.:..|||:..  
 Frog   166 ARGVVDRLEV-VNKQFVRVIPTAGT------TSEKYVWFNIGSVDSFERNLENAQDELGIEPAQR 223

  Fly   275 VPVTYDRQTDTTGRILM-----LLLVCALLMSIATRMKSIKSPLSMDSFNQMGRAKFTLVDPFDG 334
            |.|.|..::|  |..||     ||||..||.|:..              ..||        |..|
 Frog   224 VSVIYSSESD--GSFLMSLIPTLLLVGFLLFSLRR--------------GAMG--------PGRG 264

  Fly   335 GRG-------------------VLFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAKVPRGALLL 380
            |||                   |.|:||||..|||.|:.|||::||:|::||.||||:||||:|.
 Frog   265 GRGGGLFGVGETTAKMLKGNIDVKFKDVAGCEEAKLEIMEFVNFLKNPKQYQDLGAKIPRGAMLT 329

  Fly   381 GPPGCGKTLLAKAVATEAQVPFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAI 445
            ||||.||||||||.|.||.|||:::|||||:||..|:|.|||||:|...:|.||||::||||||:
 Frog   330 GPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKNAPCILFIDEIDAV 394

  Fly   446 GRQRSGTESMGQGSSG---ESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKALLRPGRFDR 507
            ||:|      |:|:.|   |.|.|||||||||||..:...|::||.|||.||||.||:|||||||
 Frog   395 GRKR------GRGNFGGQSEQENTLNQLLVEMDGFNSSTNVVILAGTNRPDILDPALMRPGRFDR 453

  Fly   508 HILIDLPTLAERKEIFEKHLSSVKLESPPT--TFSQRLARLTPGFSGADIANVCNEAALHAARNT 570
            .|.|..|.:..|..||:.||..:||:...:  ..|::||.|||||:|||||||||||||.|||..
 Frog   454 QIYIGPPDIKGRASIFKVHLRPLKLDESVSKEALSRKLAALTPGFTGADIANVCNEAALIAARYL 518

  Fly   571 QMEVSSKNLEYAVERLVGGTEKRSHALSLAERKVIAYHESGHALVGWMLPNSDILLKVTIVPRTS 635
            :..|..|:...|:||::||.||::..|...|:|.:||||:|||:|||.|.::|.||||:|:|| .
 Frog   519 KDYVVEKHFVQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVVGWYLQHADPLLKVSIIPR-G 582

  Fly   636 LALGFAQYTPSEQHLYSKEELFDKMCMALGGRAAENLVFNRITTGAQNDLEKVTKIAYSQIKKFG 700
            ..||:|||.|.||:||::|:|||:|||.||||.:|.|.|:|||||||:||:|||:.||:||.:||
 Frog   583 KGLGYAQYLPKEQYLYTREQLFDRMCMMLGGRVSEQLFFSRITTGAQDDLKKVTQSAYAQIVQFG 647

  Fly   701 MNDTLGPIYVRDADETEGGGAMGSGGKKPFSRAMESMIDNEARHVVASAYQTTEGILTTHRDKLE 765
            |::.||.:   ..|....|..:   .:||:|.|...:||.|||:::.|||:.|..:||..:|::|
 Frog   648 MSEKLGQV---SFDLPRQGEML---AEKPYSEATAELIDQEARNLINSAYERTLELLTRCKDQVE 706

  Fly   766 KLAEALLEKETLDYDQVVQLIGPPPYDLGKRQVESVEFEQSLKNLSTDT 814
            |:|:.|||||.|:...:::|:|..|:. .|...|  ||.:...:|..||
 Frog   707 KVAKRLLEKEVLEKSDMIELLGARPFP-EKSSYE--EFVEGTGSLEEDT 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spg7NP_570017.1 FtsH_ext 171..276 CDD:284011 27/106 (25%)
FtsH_fam 333..787 CDD:273520 251/477 (53%)
AAA 378..513 CDD:278434 85/137 (62%)
Peptidase_M41 595..785 CDD:279742 94/189 (50%)
afg3l1pNP_001015906.1 FtsH_ext 133..223 CDD:377663 28/111 (25%)
FtsH_fam 236..728 CDD:273520 263/526 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119497at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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