DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spg7 and SPCC965.04c

DIOPT Version :9

Sequence 1:NP_570017.1 Gene:Spg7 / 31253 FlyBaseID:FBgn0024992 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_588514.1 Gene:SPCC965.04c / 2538746 PomBaseID:SPCC965.04c Length:709 Species:Schizosaccharomyces pombe


Alignment Length:456 Identity:182/456 - (39%)
Similarity:288/456 - (63%) Gaps:29/456 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 VLFRDVAGLSEAKQEVKEFVDYLKSPEKYQRLGAKVPRGALLLGPPGCGKTLLAKAVATEAQVPF 402
            |.|.||.|:.|||:|::|.||:|:.|..:.|||.|:|||.||.||||.|||:||:|||.||.|||
pombe   264 VRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPF 328

  Fly   403 LSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIGRQRSGTESMGQGSSGESEQTL 467
            ..|:||:|.||..|:||.|||:||...:|:||.||:|||:||||::|:..:      :....|||
pombe   329 FFMSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKRNARD------AAHMRQTL 387

  Fly   468 NQLLVEMDGMATKEG----VLMLASTNRADILDKALLRPGRFDRHILIDLPTLAERKEIFEKHLS 528
            |||||::||.:..|.    |:.:.:||..:.||.||.|||||||||.:.||.:..|..|..:|..
pombe   388 NQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTR 452

  Fly   529 SVKLESPPTTFSQRLARLTPGFSGADIANVCNEAALHAARNTQMEVSSKNLEYAVERLVGGTEKR 593
            .|.|......  ..:||.|.||:|||:||:.|:||::|::|....||.::||::.:|::.|.|::
pombe   453 HVPLGKDVDL--SIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGAERK 515

  Fly   594 SHALSLAERKVIAYHESGHALVGWMLPNSDILLKVTIVPRTSLALGFAQYTPS-EQHLYSKEELF 657
            |..::...:.:.||||.|||||.....|:....|.||:||.| :||.....|. ::..:::||..
pombe   516 SAFITPENKLMTAYHEGGHALVALFTKNAMRPYKATIMPRGS-SLGMTISLPDMDKDSWTREEYL 579

  Fly   658 DKMCMALGGRAAENLVF--NRITTGAQNDLEKVTKIAYSQIKKFGMNDTLGPIYVRDADETEGGG 720
            ..:.:.:||||||.|::  ::||:||.||::|.|::|...:.:|||:|.:||:.:    |.|   
pombe   580 AMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL----EAE--- 637

  Fly   721 AMGSGGKKPFSRAMESMIDNEARHVVASAYQTTEGILTTHRDKLEKLAEALLEKETLDYDQVVQL 785
                  ....|.|..:::::|.:.::.::|:.:..:|.:|:.:|:.||.||::.|.|..:::.::
pombe   638 ------MDNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEEMNRV 696

  Fly   786 I 786
            :
pombe   697 V 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spg7NP_570017.1 FtsH_ext 171..276 CDD:284011
FtsH_fam 333..787 CDD:273520 182/456 (40%)
AAA 378..513 CDD:278434 73/138 (53%)
Peptidase_M41 595..785 CDD:279742 58/192 (30%)
SPCC965.04cNP_588514.1 FtsH_fam 258..698 CDD:273520 182/456 (40%)
P-loop_NTPase 266..>322 CDD:304359 33/55 (60%)
AAA 303..437 CDD:278434 73/139 (53%)
Peptidase_M41 517..696 CDD:279742 58/192 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0465
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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