DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment per and per1a

DIOPT Version :9

Sequence 1:NP_001259194.1 Gene:per / 31251 FlyBaseID:FBgn0003068 Length:1218 Species:Drosophila melanogaster
Sequence 2:XP_005172682.1 Gene:per1a / 563926 ZFINID:ZDB-GENE-011220-1 Length:1387 Species:Danio rerio


Alignment Length:1352 Identity:285/1352 - (21%)
Similarity:455/1352 - (33%) Gaps:413/1352 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GGESTESTHN----TKVSDSAYSNSCSNSQSQRSGS-SKSRLSGS----HSSGSSGYGGKPSTQA 58
            |..:..|.|.    |:.::|..||  .||.|..|.| |.|.||||    ||:..:....:|:...
Zfish    81 GTSTCSSLHGKGSATETTESKSSN--GNSPSPPSSSVSFSLLSGSSEQDHSTSQASNSDQPARLQ 143

  Fly    59 SSSDMI-----IKRNKDKSRKKKKNKGAGQGAGQAQTLISASTSLEGRDEEKPRPSGTGCVEQQI 118
            :..:::     :|.:....|::|         |::.||.|...:|             .||:|  
Zfish   144 TQRELLKVLRELKIHMPAERRRK---------GRSSTLASLQYAL-------------SCVKQ-- 184

  Fly   119 CRELQDQQHGEDHSEPQAIEQLQQEEEEDQSGSESEADRVEGVAKSEAAQSFPIPSPLSVTIVPP 183
            .|..|:..|             |...||                                     
Zfish   185 VRANQEYYH-------------QWSVEE------------------------------------- 199

  Fly   184 SMGGCGGVGHAAGLDSGLAKFDKTWEAGPGKLESMTGVGAAAAGTGQRGERVKEDSFCCVISMHD 248
                    .|...||  |:.|  |.|    :|:::|     :..|.|     ..|:|...:|...
Zfish   200 --------SHGCCLD--LSSF--TIE----ELDNVT-----SEYTLQ-----NTDTFSVAVSFLS 238

  Fly   249 GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTG--IPIAESRGSVPK----DA 307
            |.|:|.:.....:|....:...|..|.:.:..:|.:||.|.....  .|.:...|:..:    :.
Zfish   239 GKVVYISSQAASLLRCKAERLQGALFSELLAPQDVSTFYSSTAPSRLPPWSSCAGTSSQVDCAEE 303

  Fly   308 KSTFCVMLRRYRGLKSGGFGVIGRPVSYEPFRL---GLTFREAPEEARPDNYMVSNGTNMLLVIC 369
            ||.||   |..||..|.|      .|.|.||||   .||.|:: :.::|:         ...::.
Zfish   304 KSMFC---RISRGRDSNG------EVKYHPFRLTPYQLTLRDS-DTSQPE---------PCCLLI 349

  Fly   370 ATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLS 434
            |..:.|.|:.| .|.:.|. .|...||...:...:|..||..||||||||:|:.::.:.|.||..
Zfish   350 AERVHSGYEAP-RIPADKR-IFTTSHTPNCLFQEIDERAVPLLGYLPQDLVGKPVLVYLHPEDRL 412

  Fly   435 VMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 499
            :|...::.::   |.||..|...|.|...::|.|:.::|.|:||:||||||:.|:||.|:|...|
Zfish   413 LMVAIHKKIL---QFAGQPFDHSPLRMRARSGEYLTIDTSWSSFINPWSRKVAFIVGRHKVRTSP 474

  Fly   500 KQCNVFEAAPTCKLK-ISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETL 563
            ...:||.|....::| :|.:....|..|...:|:.:....|:...::....|...|..|:.....
Zfish   475 LNEDVFTAPEGEEMKTMSPDVPQLNELIHRFLVQPVYGGSSQGYGSLGSSGSHEHQQGATSSSES 539

  Fly   564 MDEVSRADLKLELPHENELTVSERDSVMLGEISPHHDYYDSKS---------------------- 606
            ....|...:|...|...|....:...|   :.|....:.:|::                      
Zfish   540 NGHTSEDQIKPRKPMTFEQICQDMHMV---KTSGQQVFIESRNRPPALKQGSLEALAKAADTAEA 601

  Fly   607 ---------STETPP--------SYNQLNYNENLLRFFNSKPVTAPAELDPPKTEPPEPRGTCVS 654
                     :..:||        ||.|:|..::::|:..|..|       |...:......:|.:
Zfish   602 SARDGLASLALSSPPRKELPMIYSYQQINCLDSIVRYLESFNV-------PGTVKRKCGSSSCTT 659

  Fly   655 GASGPMSPVHEGSGGSGSSGNFTTASN---------------IHM---SSVTNTSIAGTGGTGTG 701
            .::.......||:|.:.:.....|..:               :|.   |.|:.||......|...
Zfish   660 SSTSDDDKQREGAGATQAETLVVTEGSKVVPAAPAHPLTPLALHCKAESVVSATSQCSFSSTIVH 724

  Fly   702 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGTN-SGTGTGTAS---------SSKGGS 756
            .|......:.........| |.|.:.:...|...:....| ....:.||:         ...|||
Zfish   725 VGDKKPPESDIVMMEEPPT-TPTASTSAPATSVASPIPVNPQPMPSPTAAVHEKEKEKERRSGGS 788

  Fly   757 AAIPPVTLTESLLNKHNDEMEKFMLKKHRESRGRTGEKSKKSANDTLKMLEYSG-PGHGIKRGGS 820
            |.   ..||:::|:.|..:.|:..|.:.|:.             ..|:|::.|| |         
Zfish   789 AG---KGLTKAVLSAHTQQEEQAFLNRFRDL-------------SQLRMVQPSGLP--------- 828

  Fly   821 HSWEGEANKPKQQLTLGTDAIKGAAGSAGGAVGTGGVGSGGAGVAGGGG-------SGTGVAGTP 878
                     |.::.|    :|.|..| ...:.....||:..:...|.||       .|.....||
Zfish   829 ---------PPRRCT----SIPGTKG-VNSSQNYPSVGNTSSRRHGRGGKRQKHQVDGNIPNNTP 879

  Fly   879 EGRATTTSGTGTPGGAGGGGGAGAAAAAGASSSVGSSTPGPS----SYPTCTQNINLWPPFSVGI 939
                  .|.:|...|                       |.|:    ::|:..|:.|.|.|.:.. 
Zfish   880 ------ISASGPYRG-----------------------PNPAQIRPNFPSVQQSSNSWAPSAAS- 914

  Fly   940 TPPVHSTHTAMAQSSF--SSAGLFPTFYYIPASLTPTSPTRSPRMHKHPHKGGTDMPTTSQQAAA 1002
                 .|:.|...:||  |...:|||          :||....:|       ||| |:.......
Zfish   915 -----QTNGAPVGTSFPPSYMTMFPT----------SSPFSVTQM-------GTD-PSLQTGVPR 956

  Fly  1003 AAAQAMPLQYMAGVM------YPHPSL----FYTHPAAAAATAMMYQPMPFPGMANALQIPE--- 1054
            ..||..| ..|..||      |..|.|    ...:||.:...|.|.....||.....:.:|.   
Zfish   957 FPAQGFP-SVMPPVMTFMMPNYMFPQLSNPGSQLNPANSQLNAQMNSFGQFPPPVVQMSVPMFNP 1020

  Fly  1055 -----RPLGSQSAYNKSVYTTTPASMTKKVPGAFHSVTTPAQVQR-PSSQSASVKTEPGSSAAVS 1113
                 .|||||         ..|| |...:|..|::......... ||..:|:|.|.|...:..|
Zfish  1021 AMGQFYPLGSQ---------MNPA-MPAMIPQQFYNPNYQLNFSNSPSMPAANVSTTPHGQSRSS 1075

  Fly  1114 DPCKKEVPDSSPIPSVMGDYNSDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIKTTDG 1178
            .|                        .|:.|        ..|..|......|.|..||.:.....
Zfish  1076 TP------------------------QSTGP--------QAGERDGAGSPLFQSRCSSPLNLLQL 1108

  Fly  1179 SESPPD----TEKDPK-------------HRKLKSMSTSESKIMEHPEEDQT 1213
            .|.|.:    |::.|.             .......:|.::|:.:|||..::
Zfish  1109 EELPSNRTDATQQTPPPGGGATQGGVVVVQNSSNRSNTQDAKLNDHPEVSES 1160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
perNP_001259194.1 PAS 238..333 CDD:279347 24/100 (24%)
PAS 238..>300 CDD:238075 14/63 (22%)
PAS 388..495 CDD:238075 41/106 (39%)
PAS_11 391..495 CDD:291273 41/103 (40%)
per1aXP_005172682.1 PAS 369..470 CDD:238075 41/103 (40%)
PAS_3 382..466 CDD:285623 35/86 (41%)
Period_C 1161..1348 CDD:288930 285/1352 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592323
Domainoid 1 1.000 83 1.000 Domainoid score I8273
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 155 1.000 Inparanoid score I4269
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25753
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11269
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X975
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.080

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