DRSC/TRiP Functional Genomics Resources

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Protein Alignment per and Per1

DIOPT Version :9

Sequence 1:NP_001259194.1 Gene:per / 31251 FlyBaseID:FBgn0003068 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001029297.1 Gene:Per1 / 287422 RGDID:727863 Length:1293 Species:Rattus norvegicus


Alignment Length:1309 Identity:274/1309 - (20%)
Similarity:424/1309 - (32%) Gaps:420/1309 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VSDSAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNKDKSRKKKKNK 79
            ::|...:||        :|||.:..:|..|.|:|......|:..:..|..:....:.|:......
  Rat    41 LADDTDANS--------NGSSGNESNGHESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQS 97

  Fly    80 GAGQGAGQAQTLISASTSLEGRDEEKPRPSGTGCVEQQICR-----ELQDQQHGEDHSEPQAIEQ 139
            .:...:..|.:|:|||:       |:..||.:||..:|..|     ||.           .|:.:
  Rat    98 PSPPSSSIAYSLLSASS-------EQDNPSTSGCSSEQSARARTQKELM-----------TALRE 144

  Fly   140 LQQEEEEDQSGSESEADRVEGVAKSEAAQSFPIPSPLSVTIVPPSMGGCGGVGHAAGLDSGLA-- 202
            |:..                                     :||...|.|..|..|.|...||  
  Rat   145 LKLR-------------------------------------LPPERRGKGRSGTLATLQYALACV 172

  Fly   203 -------KFDKTWEAGPGK----------LESMTGVGAAAAGTGQRGERVKEDSFCCVISMHDGI 250
                   ::.:.|....|:          ||.:..:      |.:...| .:|:|...:|...|.
  Rat   173 KQVQANQEYYQQWSLEEGEPCAMDMSTYTLEELEHI------TSEYTLR-NQDTFSVAVSFLTGR 230

  Fly   251 VLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQIT-TGIP---IAESRGSVPKD---AK 308
            ::|.:.....:|...||::.|..|.:.:..:|...|....| :.:|   ...|.||..||   .|
  Rat   231 IVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQEK 295

  Fly   309 STFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNG--TNMLLVICAT 371
            |.||    |.||......|     ..|:||||      .|...:   ..||:|  .....::.|.
  Rat   296 SVFC----RIRGGPDRDPG-----PRYQPFRL------TPYVTK---IRVSDGAPAQPCCLLIAE 342

  Fly   372 PIKSSYKV----PDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHED 432
            .|.|.|:.    ||:.:      |..|||.:.:...||..|...||||||||:|..::.|.|.||
  Rat   343 RIHSGYEAPRIPPDKRI------FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPED 401

  Fly   433 LSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQ 497
            ..:|...::.::   |.||..|...|.||..:||.||.::|.|..||:|||||:.||:|.|:|..
  Rat   402 RPLMLAIHKKIL---QLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRT 463

  Fly   498 GPKQCNVF-----EAAPTCKLKISEEAQSRNTRIKEDIVKRL----------------------- 534
            .|...:||     ..||:....|.|        :.|.|.:.|                       
  Rat   464 APLNEDVFTPPVPSPAPSLDSDIQE--------LSEQIHRLLLQPVHSSSTTGLCGVGPLMSPGP 520

  Fly   535 --------------AETVSRPSDTVKQEVSR-----RCQALASFMETLMDEVSRADLKLELPHEN 580
                          ||....|:....|::.:     :.|....|:|:......|..|......:.
  Rat   521 LHSPGSSSDSNGGDAEGPGPPAPVTFQQICKDVHLVKHQGQQLFIESRAKPPPRPRLLATGTFKA 585

  Fly   581 ELTVSERDSVMLGEISPHHDYYDSKSSTETPP-------SYNQLNYNENLLRFFNSKPVTAPAEL 638
            ::...:..:..| |::|..|......:.|.|.       ||.|:|..:::||:..|..:      
  Rat   586 KVLPCQSPNPEL-EVAPAPDQASLALAPEEPERKESSGCSYQQINCLDSILRYLESCNI------ 643

  Fly   639 DPPKTEPPEPRGTCVSGASGPMSPVHEGSGGSGSSGNFTTASNIHMSSVTNTSIAGTGGTGTGTG 703
                  |...:..|.|.:.         :..|.|..:...|..:.:.:..:||.|...|.|....
  Rat   644 ------PNTTKRKCASSSC---------TASSASDDDKQRAGPVPVGAKKDTSSAVLSGEGATPR 693

  Fly   704 TGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTGTGNGTNS---------GTGTGTASSS 752
            .....| ||       .......:.|...:.:.|....|......|         |...|.|.|.
  Rat   694 KEPVVG-GTLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESDIIMMEDLPGLAPGPAPSP 757

  Fly   753 KGGSAAIP--------PVTLTESLLNKHNDEMEKFMLKKHRESRGRTGEKSKKSANDTLKMLEYS 809
            .......|        ||.||:::|:.|..:.|:..|.:.|:.....|..:...|.        |
  Rat   758 APSPTVAPDPAPDAYRPVGLTKAVLSLHTQKEEQAFLSRFRDLGRLRGLDTSSVAP--------S 814

  Fly   810 GPG--HG-IKRGGSHSWEGEANKPKQQLTLGTDAIKGAAGSAGGAVGTGGVGSGGAGVAGGGGSG 871
            .||  || |..|..|....:|.:.:...|                                    
  Rat   815 APGCHHGPIPSGRRHHCRSKAKRSRHHQT------------------------------------ 843

  Fly   872 TGVAGTPEGRATTTSGTGTPGGAGGGGGAGAAAAAGASSSVGSSTPGPSSYPTCTQNINLWPPFS 936
                ..||          ||                  ..|...:|.|||.|        |||  
  Rat   844 ----PRPE----------TP------------------CYVSHPSPVPSSGP--------WPP-- 866

  Fly   937 VGITPPVHSTHTAMAQSSFSSAGLFPTFYYIPASLTPTSPTRSPRMHKHPHKGGTD----MPTTS 997
                ||..:...|:.|               |..|    |..|||       ||..    .||:.
  Rat   867 ----PPATTPFPAVVQ---------------PYPL----PVFSPR-------GGPQPLPPAPTSV 901

  Fly   998 QQAAAAAAQAMPL--QYMAGVMYPHPSLF-Y----------THPAAAAATAMMYQPMPFPGMANA 1049
            ..|...:....|:  ..:...::|.|:.: |          ..||:.:.:..:..|.|.|     
  Rat   902 SPATFPSPLVTPMVALVLPNYLFPSPTSYPYGVSQAPVEGPPTPASHSPSPSLPPPPPSP----- 961

  Fly  1050 LQIPERPLGSQSAYNKSVYTTTPASMTKKVPGAFHS-VTTPAQV------QRPSSQSASVKTEPG 1107
               |.||             .:|         .|:| .::|.|:      :.|.::..:....||
  Rat   962 ---PHRP-------------DSP---------LFNSRCSSPLQLNLLQLEESPRTEGGAAAGGPG 1001

  Fly  1108 SSAAVSDPCKKEVPDSSPIPSVMGDYNSDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSF 1172
            |||....|.::.......:..|....|.|....||:........||...:    ||:.|....|.
  Rat  1002 SSAGPLPPSEESAEPEPRLVEVTESSNQDALSGSSDLLELLLQEDSRSGT----GSAASGSLGSG 1062

  Fly  1173 IKTTDGSES 1181
            :.:..||.|
  Rat  1063 LGSGSGSGS 1071

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
perNP_001259194.1 PAS 238..333 CDD:279347 27/101 (27%)
PAS 238..>300 CDD:238075 14/65 (22%)
PAS 388..495 CDD:238075 45/106 (42%)
PAS_11 391..495 CDD:291273 45/103 (44%)
Per1NP_001029297.1 Interaction with BTRC. /evidence=ECO:0000250|UniProtKB:O15534 1..151 29/172 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..134 25/107 (23%)
IMUP 6..>59 CDD:292389 6/25 (24%)
Nuclear export signal 1. /evidence=ECO:0000250|UniProtKB:O54943 138..147 3/19 (16%)
PAS 360..461 CDD:238075 45/103 (44%)
PAS_3 373..457 CDD:285623 39/86 (45%)
Nuclear export signal 2. /evidence=ECO:0000250|UniProtKB:O35973 489..498 2/8 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 509..544 3/34 (9%)
Required for phosphorylation by CSNK1E. /evidence=ECO:0000250 596..814 47/248 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..697 10/58 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 748..771 5/22 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 808..870 26/151 (17%)
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:O35973 823..839 4/15 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 935..1094 34/171 (20%)
Nuclear export signal 3. /evidence=ECO:0000250|UniProtKB:O54943 978..985 1/6 (17%)
LXXLL 1039..1043 0/3 (0%)
Period_C <1079..1220 CDD:288930
CRY binding domain. /evidence=ECO:0000250 1145..1293
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1204..1293
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350617
Domainoid 1 1.000 89 1.000 Domainoid score I7651
eggNOG 1 0.900 - - E1_KOG3753
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 174 1.000 Inparanoid score I3978
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45233
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11269
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X975
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.980

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