DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment per and Per1

DIOPT Version :10

Sequence 1:NP_525056.2 Gene:per / 31251 FlyBaseID:FBgn0003068 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_035195.2 Gene:Per1 / 18626 MGIID:1098283 Length:1291 Species:Mus musculus


Alignment Length:1368 Identity:279/1368 - (20%)
Similarity:444/1368 - (32%) Gaps:429/1368 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VSDSAYSNSCSNSQSQRSGSSKSRLSGSHSSGSSGYGGKPSTQASSSDMIIKRNKDKSRKKKKNK 79
            ::|...:||        :|||.:..:|..|.|:|......|:..:..|..:....:.|:......
Mouse    41 LADDTDANS--------NGSSGNESNGPESRGASQRSSHSSSSGNGKDSALLETTESSKSTNSQS 97

  Fly    80 GAGQGAGQAQTLISASTSLEGRDEEKPRPSGTGCVEQQICR-----ELQDQQHGEDHSEPQAIEQ 139
            .:...:..|.:|:|||:       |:..||.:||..:|..|     ||.           .|:.:
Mouse    98 PSPPSSSIAYSLLSASS-------EQDNPSTSGCSSEQSARARTQKELM-----------TALRE 144

  Fly   140 LQQEEEEDQSGSESEADRVEGVAKSEAAQSFPIPSPLSVTIVPPSMGGCGGVGHAAGLDSGLA-- 202
            |:..                                     :||...|.|..|..|.|...||  
Mouse   145 LKLR-------------------------------------LPPERRGKGRSGTLATLQYALACV 172

  Fly   203 -------KFDKTWEAGPGK----------LESMTGVGAAAAGTGQRGERVKEDSFCCVISMHDGI 250
                   ::.:.|....|:          ||.:..:      |.:...| .:|:|...:|...|.
Mouse   173 KQVQANQEYYQQWSLEEGEPCAMDMSTYTLEELEHI------TSEYTLR-NQDTFSVAVSFLTGR 230

  Fly   251 VLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQIT-TGIP---IAESRGSVPKD---AK 308
            ::|.:.....:|...||::.|..|.:.:..:|...|....| :.:|   ...|.||..||   .|
Mouse   231 IVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFTQEK 295

  Fly   309 STFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNG--TNMLLVICAT 371
            |.||    |.||......|     ..|:||||      .|...:   ..||:|  .....::.|.
Mouse   296 SVFC----RIRGGPDRDPG-----PRYQPFRL------TPYVTK---IRVSDGAPAQPCCLLIAE 342

  Fly   372 PIKSSYKV----PDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHED 432
            .|.|.|:.    ||:.:      |..|||.:.:...||..|...||||||||:|..::.|.|.||
Mouse   343 RIHSGYEAPRIPPDKRI------FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPED 401

  Fly   433 LSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQ 497
            ..:|...::.::   |.||..|...|.||..:||.||.::|.|..||:|||||:.||:|.|:|..
Mouse   402 RPLMLAIHKKIL---QLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRT 463

  Fly   498 GPKQCNVF-EAAPTCKLKISEEAQSRNTRIKEDIVKRL--------------------------- 534
            .|...:|| ..||:....:..:.|..:.:|...:::.:                           
Mouse   464 APLNEDVFTPPAPSPAPSLDSDIQELSEQIHRLLLQPVHSSSPTGLCGVGPLMSPGPLHSPGSSS 528

  Fly   535 ------AETVSRPSDTVKQEVSR-----RCQALASFMETLMDEVSRADLKLELPHENELTVSERD 588
                  ||....|:....|::.:     :.|....|:|:......|..|......:.::...:..
Mouse   529 DSNGGDAEGPGPPAPVTFQQICKDVHLVKHQGQQLFIESRAKPPPRPRLLATGTFKAKVLPCQSP 593

  Fly   589 SVMLGEISPHHDYYDSKSSTETPP-------SYNQLNYNENLLRFFNSKPVTAPAELDPPKTEPP 646
            :..| |::|..|......:.|.|.       ||.|:|..:::||:..|..:            |.
Mouse   594 NPEL-EVAPVPDQASLALAPEEPERKETSGCSYQQINCLDSILRYLESCNI------------PS 645

  Fly   647 EPRGTCVSGASGPMSPVHEGSGGSGSSGNFTTASNIHMSSVTNTSIAGTGGTGTGTGTGTGTGTG 711
            ..:..|.|.:|...|        |.|..:...|..:.:.:..:.|.|...|.|.........| |
Mouse   646 TTKRKCASSSSYTAS--------SASDDDKQRAGPVPVGAKKDPSSAMLSGEGATPRKEPVVG-G 701

  Fly   712 T-------GTGTGTGTGTGTGTGTGTGTGTGTGNGTNS---------GTGTGTASSSKGGSAAIP 760
            |       .......:.|...:.:.|....|......|         |...|.|.|........|
Mouse   702 TLSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESDIIMMEDLPGLAPGPAPSPAPSPTVAP 766

  Fly   761 --------PVTLTESLLNKHNDEMEKFMLKKHRESRGRTGEKSKKSANDTLKMLEYSGPG--HG- 814
                    ||.||:::|:.|..:.|:..|.:.|:.....|..:...|.        |.||  || 
Mouse   767 DPTPDAYRPVGLTKAVLSLHTQKEEQAFLNRFRDLGRLRGLDTSSVAP--------SAPGCHHGP 823

  Fly   815 IKRGGSHSWEGEANKPKQQLTLGTDAIKGAAGSAGGAVGTGGVGSGGAGVAGGGGSGTGVAGTPE 879
            |..|..|....:|.:.:.                                               
Mouse   824 IPPGRRHHCRSKAKRSRH----------------------------------------------- 841

  Fly   880 GRATTTSGTGTPGGAGGGGGAGAAAAAGASSSVGSSTPGPSSYPTCTQNINLWPPFSVGITPPVH 944
             ....|....||                  ..|...:|.|||.|        |||      ||..
Mouse   842 -HHHQTPRPETP------------------CYVSHPSPVPSSGP--------WPP------PPAT 873

  Fly   945 STHTAMAQSSFSSAGLFPTFYYIPASLTPTSPTRSPRMHKHPHKGGTD----MPTTSQQAAAAAA 1005
            :...||.|               |..|    |..|||       ||..    .||:...|...:.
Mouse   874 TPFPAMVQ---------------PYPL----PVFSPR-------GGPQPLPPAPTSVSPATFPSP 912

  Fly  1006 QAMPLQYMAGVMYPH------PSLFY---THPAAAAATAMMYQPMPFPGMANALQIPERPLGSQS 1061
            ...|   |..::.|:      ||..|   ..|.....|...:.|.|        .:|..||....
Mouse   913 LVTP---MVALVLPNYLFPTPPSYPYGVSQAPVEGPPTPASHSPSP--------SLPPPPLSPPH 966

  Fly  1062 AYNKSVYTTTPASMTKKVPGAFHSVTTPAQV------QRPSSQSASVKTEPGSSAAVSDPCKKEV 1120
            ..:..::.:..:|              |.|:      :.|.::..:....|||||....|.::..
Mouse   967 RPDSPLFNSRCSS--------------PLQLNLLQLEESPRTEGGAAAGGPGSSAGPLPPSEETA 1017

  Fly  1121 PDSSPIPSVMGDYNSDPPCSSSN------PANNKKYTDS-------------NGNSDDMDG---- 1162
            ...:.:..|....|.|....||:      ..:::..|.|             :|:.....|    
Mouse  1018 EPEARLVEVTESSNQDALSGSSDLLELLLQEDSRSGTGSAASGSLGSGLGSGSGSGSHEGGSTSA 1082

  Fly  1163 ----SSFSSFYSSFIKTTDGSESPPDTEK---DPKHRKLKS---------MSTSESKIM---EHP 1208
                ||.||..|.:..:.|.||:.....:   :|..:.:|.         |:.::.::|   :.|
Mouse  1083 SITRSSQSSHTSKYFGSIDSSEAEAGAARARTEPGDQVIKCVLQDPIWLLMANADQRVMMTYQVP 1147

  Fly  1209 EED 1211
            ..|
Mouse  1148 SRD 1150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
perNP_525056.2 PAS 238..333 CDD:395786 27/101 (27%)
PAS 388..495 CDD:238075 45/106 (42%)
Per1NP_035195.2 Interaction with BTRC. /evidence=ECO:0000250|UniProtKB:O15534 1..151 29/172 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..134 25/107 (23%)
Nuclear export signal 1. /evidence=ECO:0000250|UniProtKB:O54943 138..147 3/19 (16%)
PAS_3 373..457 CDD:430001 39/86 (45%)
Nuclear export signal 2. /evidence=ECO:0000269|PubMed:11591712 489..498 1/8 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 508..544 3/35 (9%)
Required for phosphorylation by CSNK1E 596..815 48/248 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..698 11/58 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 749..772 5/22 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 809..873 24/151 (16%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:10848614 824..840 4/15 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 938..1037 20/120 (17%)
Nuclear export signal 3. /evidence=ECO:0000250|UniProtKB:O54943 981..988 1/6 (17%)
LXXLL 1042..1046 0/3 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1051..1099 9/47 (19%)
Period_C <1082..1201 CDD:463464 14/69 (20%)
CRY binding domain 1148..1291 1/3 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1207..1291
Blue background indicates that the domain is not in the aligned region.

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