DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment per and lin-42

DIOPT Version :9

Sequence 1:NP_001259194.1 Gene:per / 31251 FlyBaseID:FBgn0003068 Length:1218 Species:Drosophila melanogaster
Sequence 2:NP_001309559.1 Gene:lin-42 / 173503 WormBaseID:WBGene00018572 Length:654 Species:Caenorhabditis elegans


Alignment Length:456 Identity:91/456 - (19%)
Similarity:153/456 - (33%) Gaps:182/456 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   391 FAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFC 455
            |..:|::|..::|:|.|::..||.||.||||:|::.|.:..|:.|:::.:..:.........|..
 Worm   226 FITKHSSTCALTHIDYASIPYLGLLPTDLIGKSLLAFVYSPDVHVVRQAHIDLHNSRGKIVKSIA 290

  Fly   456 SKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQ 520
            .  .|.:..||..:..:|||:::||||:||:|.||..||:               |.|.|.:   
 Worm   291 D--LRLVAHNGSILRCQTEWSAYVNPWTRKMELVVARHRI---------------CSLPIGD--- 335

  Fly   521 SRNTRIKEDIVKRLAETVSRPSDTVKQEVSRRCQALASFMETLMDEVSRADLKLELP-------H 578
                          ::.:|.|...::........|     :|..||: |..:...:|       |
 Worm   336 --------------SDVISSPPPGIQSNTLPPVMA-----KTFEDEL-RTIMNKPVPSTSRHSHH 380

  Fly   579 ENELTVSERD-----SVMLGEISPHHDYYDS---------------------------------- 604
            .:..::.:::     ::.||.      |.|.                                  
 Worm   381 HHHSSLKDQNQGFPANIDLGA------YIDKIVEQLVVNSTAQQQQKVAVAAAAAAQAAQAAVVA 439

  Fly   605 ------------KSSTETPPSYNQLNYNENLLRFF--NSKPVTAPAELD--------PPKT---- 643
                        .:||:.|.||.|:|..||:.|..  .|:| .:||:.|        ||:|    
 Worm   440 TAQIRKVASAPPTTSTDPPLSYTQINCLENVHRLLKSQSRP-ESPAKQDEPFDEKKYPPQTPLTR 503

  Fly   644 -------------------------------EPPEPRGTCVSGASG------PMSPVHEGSGGSG 671
                                           .||..|.|.:...|.      .|:|......|..
 Worm   504 EALTLHTKRFEDEYKDTWCRRLKRLSDDVPSSPPAKRTTPIHWTSSSQNHYRTMAPAPPPPPGKN 568

  Fly   672 SSGNFTTASNIHMSSVTNTS---------IAGT----------------GGTGTGTGTGTGTGTG 711
            ....:|...::.....|||.         |:|:                |.|.|| |....:||.
 Worm   569 YQITYTPLDDLTDQKSTNTKSDVENVAYPISGSKFSTPMRLSIDGLLPRGATSTG-GASPTSGTN 632

  Fly   712 T 712
            :
 Worm   633 S 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
perNP_001259194.1 PAS 238..333 CDD:279347
PAS 238..>300 CDD:238075
PAS 388..495 CDD:238075 35/103 (34%)
PAS_11 391..495 CDD:291273 35/103 (34%)
lin-42NP_001309559.1 PAS 225..328 CDD:238075 35/103 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160157564
Domainoid 1 1.000 80 1.000 Domainoid score I5574
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D133095at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto17804
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3625
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.970

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