DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH3B and Msgn1

DIOPT Version :9

Sequence 1:NP_525055.1 Gene:HLH3B / 31249 FlyBaseID:FBgn0011276 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001103021.1 Gene:Msgn1 / 689864 RGDID:1587516 Length:187 Species:Rattus norvegicus


Alignment Length:145 Identity:39/145 - (26%)
Similarity:63/145 - (43%) Gaps:21/145 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 QADANRSLSSSPRSHSRNGLLTAPASSGSSVGGSGGGGGNGSGG------NASSGGGSGVGATGG 164
            ||...:|||..|...|.:.:......||:|.|||.|...:.:||      :..:...|.:.|.||
  Rat    40 QASPTQSLSPVPSLESYSEVALPCGHSGASTGGSDGYSSHEAGGLVELDYSMLAFQPSYIHAAGG 104

  Fly   165 V-------------RKVFTNTRERWRQQNVSGAFAELRKLVPT--HPPDKKLSKNEILRSAIKYI 214
            :             |:...:.||:.|.:.::.|...||..:|.  ....:.|:|.:.|:..||||
  Rat   105 LKGQKGSKVKMSVQRRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYI 169

  Fly   215 KLLTGILEWQQRQAP 229
            :.||.:|...:...|
  Rat   170 RELTDLLNGGREPRP 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH3BNP_525055.1 HLH 171..222 CDD:197674 16/52 (31%)
Msgn1NP_001103021.1 HLH 119..173 CDD:278439 15/53 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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