DRSC/TRiP Functional Genomics Resources

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Protein Alignment HLH3B and Neurog2

DIOPT Version :10

Sequence 1:NP_525055.1 Gene:HLH3B / 31249 FlyBaseID:FBgn0011276 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_001385606.1 Gene:Neurog2 / 295475 RGDID:1309061 Length:263 Species:Rattus norvegicus


Alignment Length:253 Identity:59/253 - (23%)
Similarity:95/253 - (37%) Gaps:89/253 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 FSLNDTEEDEEDLRDYIVLNGNQADANRSLS--SSPRSHSRNGLLTAPASSGSSVGGSGGGGGNG 146
            |..::|.|.:|: .:.::|.|:.:.|:.:|:  ||......:..|..|.::....|...|.|..|
  Rat     2 FVKSETLELKEE-EEVLMLLGSASPASATLTPMSSSADEEEDEELRRPGAARGQRGAEAGQGVQG 65

  Fly   147 SGGNASSGGGSGVGATGGV------------------------------RKVFTNTRERWRQQNV 181
            |  :||..||...|...|:                              |::..|.|||.|..|:
  Rat    66 S--SASGAGGCRPGRLLGLVHECKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNL 128

  Fly   182 SGAFAELRKLVPTHPPDKKLSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRM 246
            :.|...||:::||.|.|.||:|.|.||.|..||..||..|                       |:
  Rat   129 NAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETL-----------------------RL 170

  Fly   247 ANGHAADGENLENPDVPPVRHIKCERTDGQMHRNGIGHGHANGNAGNDLLMIAPGAVV 304
            |: |.|.|.:|:                              |...::.::::|||.:
  Rat   171 AD-HCAGGGSLQ------------------------------GALFSEAVLLSPGAAL 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH3BNP_525055.1 bHLH_TS_dHLH3B_like 166..225 CDD:381551 26/58 (45%)
Neurog2NP_001385606.1 bHLH_TS_NGN2_ATOH4 104..172 CDD:381560 27/90 (30%)

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