DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HLH3B and Ptf1a

DIOPT Version :10

Sequence 1:NP_525055.1 Gene:HLH3B / 31249 FlyBaseID:FBgn0011276 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_446416.1 Gene:Ptf1a / 117034 RGDID:621709 Length:326 Species:Rattus norvegicus


Alignment Length:219 Identity:58/219 - (26%)
Similarity:82/219 - (37%) Gaps:53/219 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TNESPRSGHLNGNGSMRDTAAG-------------RHPPALLRHATPHLQPKTESISDGDGDAEL 81
            |::|.|....:|:..:.|..|.             |....||....|...|..           |
  Rat    28 TDQSSRDPLEDGDELLGDEQAEVEFLSHQLHEYCYRDGACLLLQPAPSAAPHA-----------L 81

  Fly    82 SDFSLNDTEEDEEDLRDYIVLNGNQADANRSLSSSPRS-HSRNGLL----TAPASSGSSVGGSGG 141
            :...|.|..| .||...|.      .||...|.:.|.| .|....|    ||..|.|:.:.|..|
  Rat    82 APPPLGDPGE-PEDSGSYC------CDAGAPLGAFPYSPGSPPSCLAYPCTAVLSPGTRLRGLNG 139

  Fly   142 GGGNGSGGNASSGGGSGVGATGGVR--------KVFTNTRERWRQQNVSGAFAELRKLVPTHPPD 198
                     |::...:.......||        :...|.|||.|.|:::.||..||..:||.|.:
  Rat   140 ---------AAAAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYE 195

  Fly   199 KKLSKNEILRSAIKYIKLLTGILE 222
            |:|||.:.||.||.||..|:.:::
  Rat   196 KRLSKVDTLRLAIGYINFLSELVQ 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HLH3BNP_525055.1 bHLH_TS_dHLH3B_like 166..225 CDD:381551 25/65 (38%)
Ptf1aNP_446416.1 bHLH_TS_PTF1A 164..218 CDD:381423 24/53 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 229..249
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..326
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.