DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and pkd1l3

DIOPT Version :10

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:XP_021333660.2 Gene:pkd1l3 / 565944 ZFINID:ZDB-GENE-060810-132 Length:1083 Species:Danio rerio


Alignment Length:350 Identity:72/350 - (20%)
Similarity:122/350 - (34%) Gaps:111/350 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   336 NVDVNLF-----------------SICTLRVEKTPFGGIVPDVQVDSAKLLENVDQMPYTGLLAL 383
            ||:|.||                 ::|:..::.:       :..|....|.||::          
Zfish   329 NVNVQLFQFKVNPLEMKSDENITGTVCSFSLQSS-------NSSVKFKDLPENIE---------- 376

  Fly   384 LIYVLVFIQFAQTLAVKL-WYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEGA 447
             || |...:.||...|.: |.....:.|.:|..|     .||.|||..|...::..|........
Zfish   377 -IY-LPQPEAAQPEVVDVTWKNGFAVTSTFNITD-----ANVTVVVTAVPNRNISLSFTLHPPNG 434

  Fly   448 SKMEFIDFRRPSRMHQLTTITI--GFLICIT-TLR-----LWRVLQFASVFKLFTRTLYLAWSAV 504
            :.:        |..:|.||:|.  |:...|. .:|     .|:|    ||..    |.|.: |.|
Zfish   435 TNI--------SSWNQSTTVTYKDGYRWLINPDMRKELDGTWKV----SVLP----TSYTS-SDV 482

  Fly   505 ASTAIAIVIFLIGFCFAVVTINGNYSSN----FNKLVKSMVMCMCYS---FGFSAQVKPSELFHG 562
            .:..:::   .:..|....|.||.:|..    ....:.::..|:|..   ||.|..|.|:::   
Zfish   483 LTFKMSV---FVTKCLFWDTDNGQWSREGCMVGPNTMPNLTHCLCNHTTFFGSSFFVMPNQV--- 541

  Fly   563 GKWLGILCYGVLAFV------IIVLLINVFVSLINDYFTVAK----TIRDSERENRITFFEFLVV 617
                 .|......|.      |:|::::.|.:|   |..:..    ..|.:.|..::|..|    
Zfish   542 -----DLSKTAALFATVNENYIVVVVLSCFFAL---YLILVMWAWYADRKALRTRKMTLLE---- 594

  Fly   618 EFSGVLGRFRKLPCWRRNYVRNGRT 642
                     ...||.:.||:.|.:|
Zfish   595 ---------DNHPCAQYNYLVNVQT 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 Polycystin_dom 171..369 CDD:466668 7/49 (14%)
PKD_channel 370..595 CDD:462341 54/246 (22%)
pkd1l3XP_021333660.2 CLECT 46..154 CDD:214480
GPS 493..531 CDD:460350 7/37 (19%)
PLAT_polycystin 602..717 CDD:238850 3/8 (38%)
Blue background indicates that the domain is not in the aligned region.

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