DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and Pkd2

DIOPT Version :10

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster


Alignment Length:148 Identity:29/148 - (19%)
Similarity:50/148 - (33%) Gaps:59/148 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   606 SFAIR-------RIVLNYFLP------FMF-PMRSKVRLIQFYNKCLVNREKHRKEARAR----- 651
            |||:|       .::.:|:.|      ||| ||..|...:            .|.|.::|     
  Fly   439 SFALRTAYRLPEALIRDYYGPLVGVRNFMFLPMLMKTHTV------------GRVELKSRNPFHH 491

  Fly   652 ----IRFMVDRRRIETLRKGEFSAGGSFLKQHVFERIFKTAKCFLCQE---KTYARKLFYCAEVK 709
                .::..|.|.:|.|             .:....:.:.|:....|.   :.|.|.|..|.|.:
  Fly   492 PVFHYQYFEDERDVEAL-------------VYSIREVLRIAEAEPLQRLGIELYNRPLPGCEEFE 543

  Fly   710 CQSSFCKDCVEDNFGKCY 727
            ..|        |::.:|:
  Fly   544 FNS--------DDYWRCH 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 Polycystin_dom 171..369 CDD:466668
PKD_channel 370..595 CDD:462341
Pkd2NP_609561.2 DUF5585 <29..272 CDD:465521
Polycystin_dom 404..578 CDD:466668 29/148 (20%)
PKD_channel 579..803 CDD:462341
Blue background indicates that the domain is not in the aligned region.

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