DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and Pkd2

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster


Alignment Length:444 Identity:84/444 - (18%)
Similarity:180/444 - (40%) Gaps:62/444 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 QSVLLGVMRLRQLRVSNPQVGLGPPKFSDTYYMPDWQLPYRKLHYSDKYWRIYEPWIPIKMGFEF 274
            :::|||..||||:||.           .::.|:.|..:.|....|: .|....|...|:..|..|
  Fly   431 ENLLLGPPRLRQIRVR-----------KESCYVNDAFIRYFNTCYA-AYSSGAEDRKPMHKGSPF 483

  Fly   275 LDALLMNFDHVGSLNSYPELAGYVSLLARSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDV 339
            .....::...:.::.::....||...|......::|:|:.|.:.|||...:....::|.|:|.:.
  Fly   484 RTMHDLDSTPIWTVLAFYRTGGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENT 548

  Fly   340 NLFSICTLRVEKTPFGGIVPDVQVDSAKLLENVDQMPYT-----GLLALLIYVLVFIQF------ 393
            ::|....|..|..|.||::|...:.:.|:        |:     .:|..:||:..:|..      
  Fly   549 DIFQSIKLIAEIPPTGGVIPQAHLQTVKM--------YSFFTDRSMLMTVIYIFWYIMVIYYTIY 605

  Fly   394 ----AQTLAVKLWYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEGASKMEFID 454
                .:...:|:::     .|:.|.||..|.:...|.:|..:.....|.|:..:.......:.:|
  Fly   606 EITEIRKSGIKIYF-----CSMLNILDCAILLGCYLALVYNIWHSFKVMSLTARAHSDVTYQSLD 665

  Fly   455 FRRPSRMHQLTTITI-GFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGF 518
            ......:..:..:.| .||:.|   ::::.:.|......||.||......:|..::...|..:.:
  Fly   666 VLCFWNIIYVDMMAILAFLVWI---KIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAY 727

  Fly   519 CFAVVTINGNYSSNFNKLVKS---MVMCMCYSFGFSAQVKPSELFHGGKWLGILCYGVLAFVIIV 580
            ....:.:.|....:|...:.|   |:..:...|.::.      :....:.||.:.:.....::..
  Fly   728 AQLGLLLFGTKHPDFRNFITSILTMIRMILGDFQYNL------IEQANRVLGPIYFLTYILLVFF 786

  Fly   581 LLINVFVSLINDYFTVAKTIRDSERENRITFFEFLVVEFSGVL------GRFRK 628
            :|:|:|:::|.:.:   .|::....:.|.....::..:.||:|      ||.|:
  Fly   787 ILLNMFLAIIMETY---NTVKGEITQGRSHLGSYIYRKLSGMLYWITHCGRKRR 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 76/403 (19%)
Pkd2NP_609561.2 PKD_channel 402..803 CDD:285288 76/408 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456384
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10877
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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