DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and Loxhd1

DIOPT Version :10

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_001401329.1 Gene:Loxhd1 / 291427 RGDID:1304815 Length:2278 Species:Rattus norvegicus


Alignment Length:129 Identity:22/129 - (17%)
Similarity:50/129 - (38%) Gaps:34/129 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 DLFMYN-HTDYTGLQEVYFLNQLFDFIEST------------LVLAFNSN--------STESGSP 203
            :|..|| ..|...|:..|:..::::.:.:|            .:..|..|        :::|.| 
  Rat    22 ELLNYNSEDDEDELEHEYYKAKVYEVVTATGDVRGAGTDANVFITIFGENGLSPKLHLTSKSES- 85

  Fly   204 GWAHAEQSVLLGVMRLR--------QLRVSNPQVGLGPPKFSDTYYMPDWQLPYRKLHYSDKYW 259
                |.:...:.|.|:|        ::|:.:...||....:.|...:.|.:.|:.:.:::...|
  Rat    86 ----AFEKANVDVFRVRTNNVGLIYKIRIEHDNTGLNASWYLDRVIVTDMKRPHLRYYFNCNNW 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 Polycystin_dom 171..369 CDD:466668 18/117 (15%)
PKD_channel 370..595 CDD:462341
Loxhd1NP_001401329.1 PLAT_repeat 43..162 CDD:238854 16/108 (15%)
PLAT_repeat 172..289 CDD:238854
PLAT_repeat 296..414 CDD:238854
PLAT_repeat 425..542 CDD:238854
PLAT_repeat 554..675 CDD:238854
PLAT_repeat 684..805 CDD:238854
PLAT 816..>896 CDD:412108
PLAT_repeat 1026..1146 CDD:238854
PLAT_repeat 1180..1300 CDD:238854
PLAT_repeat 1311..1437 CDD:238854
PLAT_repeat 1465..1585 CDD:238854
PLAT 1634..1749 CDD:396180
PLAT_repeat 1763..1880 CDD:238854
PLAT_repeat 1890..2010 CDD:238854
PLAT 2023..2124 CDD:412108
PLAT_repeat 2159..2277 CDD:238854
Blue background indicates that the domain is not in the aligned region.

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