DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and CG30048

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_001014521.2 Gene:CG30048 / 246415 FlyBaseID:FBgn0050048 Length:1125 Species:Drosophila melanogaster


Alignment Length:656 Identity:124/656 - (18%)
Similarity:228/656 - (34%) Gaps:194/656 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 PIKFV-ILSIDRALWPPRIYIPPRCDKDEMDEKEERRDFLK---QRL-------INKRANLMLTS 111
            |.|.| :||.||.    .:.:..|...:|:.:.:|.|..||   .:|       |||:.:.::.|
  Fly   544 PKKIVRVLSSDRI----HMVLFARAVLNEVLKTDEGRVCLKLVSMKLKLNWWYPINKKPSTLVLS 604

  Fly   112 RYRNYKLNDQY--------KMIAHDLFI-YGPYFLCLM--CLVLVTRDQTL--YHNTRI---ITD 160
             .|.|:..|.:        ..|....|| |.|.|...:  .|:..||....  :.:|.:   :|:
  Fly   605 -VRIYQREDNFTVQIPLNRSQIHMKTFITYDPEFDTEIRNSLISSTRSPRAISFSSTEVKNCLTE 668

  Fly   161 LFMYNHTDYTGLQEVYFLNQLFDFIESTLVLAFNSNSTESGSPGWAHAEQSVLLGVMRLRQLRVS 225
            ..:..|      ||:.....:  .:|.||:....:.||        |..|.||....:.....:|
  Fly   669 GTLQTH------QEIRMYRMV--LMEHTLLAVQFTTST--------HKLQVVLRTKEKPSVREIS 717

  Fly   226 NPQVGLGPPKFSDTYYMPDWQLPYRKLHYSDKYW---RIYEPWIPIKMGFEFLDALLMNFDHVGS 287
            |.:..:.....:.|..:.:      ..|.:|:.:   |:|..                  ..:|.
  Fly   718 NSKCTIPALTTNATILLRN------NCHKADRAYIALRLYRD------------------TSMGK 758

  Fly   288 LNSYPELAG---YVSLLARSAANSMKVIDYLSENHWL------TLNTSAVFIDFTLYNVDVNLFS 343
            .::.|...|   :..:....:.::.:....|....||      |::.|          |:..:..
  Fly   759 ADNSPIANGPARFAFVFQIRSCDTWQYSASLDNQKWLHYGCYPTMDLS----------VEKGIRC 813

  Fly   344 ICTLRVEKTPFGGIVPDVQV-----DSAKLLENVDQMPYTGLLALLIYVLVFIQFAQTLAVKLWY 403
            .|.:....|.:...:|.|:|     .:|||...:..:..|.||.:|:::|...::...|..|...
  Fly   814 TCNVLGTYTDYLYYIPGVEVPIGVFQAAKLNILIILVYLTALLIILLWILWLYRYRSKLPSKTIR 878

  Fly   404 EPHLLKSVWNKLDLFIFMVNVLVVVLVVLR------ESLVASMMKKVEGASK-MEFIDFRR-PSR 460
            .|        |.:|.......|..||:.||      ....||:.....|.|: :..|:..: |..
  Fly   879 FP--------KFELDDESTGELHDVLISLRTGGRINAGTTASVHLSFRGQSQPVRHIEIMQDPEN 935

  Fly   461 MHQLTTITIGFLICITTLRLW----------RVLQF---ASVFKL-FTRTL------------YL 499
            :         ||...|||.:|          :|:.:   |..|.: |.|.:            :|
  Fly   936 I---------FLKSNTTLYIWVRTRDIRIPTKVMVYHNNAGRFPMWFLRRIEVTDIQTGETQVFL 991

  Fly   500 A--WSAVASTAIAIVI----------------FLIGF--------CFAVVTINGNYSSNFNKLVK 538
            |  |....:..::..:                |::.|        .:..||.:...|:::.::.:
  Fly   992 ARKWLEKGTLLMSSTLIYKQGDVRMFDVWKNRFMMSFEMFWINWSLWQPVTGSWRESAHYPRMSR 1056

  Fly   539 SMVMC-----------MCYSFGFSAQVKPSELFHGGKWLGILCYGVLAFVIIVLLINVFV----S 588
            :...|           :|.|| |.  |..||..|..:.|.:....::...:|...:||.:    :
  Fly  1057 AKRFCEFICKLLVNYTICASF-FG--VTTSENLHLMRSLFLNYKDIIVLTMICSFVNVMLQTMFN 1118

  Fly   589 LINDYF 594
            |:|..|
  Fly  1119 LVNYKF 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 91/517 (18%)
CG30048NP_001014521.2 REJ 42..346 CDD:280229
PLAT 896..996 CDD:294016 22/108 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.010

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