DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and Loxhd1

DIOPT Version :10

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_001401328.1 Gene:Loxhd1 / 240411 MGIID:1914609 Length:2278 Species:Mus musculus


Alignment Length:450 Identity:79/450 - (17%)
Similarity:140/450 - (31%) Gaps:191/450 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 FEFLDALLMNFDHVGSLNSYPELAGYVSLLARSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYN 336
            |:.|||:::|   :|.                      ||:      :.:|:.|..|....|..|
Mouse  1749 FDLLDAMVVN---IGK----------------------KVL------YEMTVWTGDVVGGGTDSN 1782

  Fly   337 VDVNLFSICTLRVEKTPFGGIVPDVQVDSAK-----------LLENVDQMPYTGLLALLIYVLVF 390
            :.:.|:.|          .|...:||:|..|           ::|.:|..|:|            
Mouse  1783 IFMTLYGI----------NGSTEEVQLDKKKARFEREQNDTFIMEILDIAPFT------------ 1825

  Fly   391 IQFAQTLAVKL--------WYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEGA 447
                 .:.:::        |:...:|....|..||.:|.....:..... :::||..:...::|.
Mouse  1826 -----KMRIRIDGMGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQKKG-KKTLVCEICAVIDGE 1884

  Fly   448 SKMEFIDFRRPSRMHQLTTITIGFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIV 512
            ..||:            |:.|:.    :.|..:......|:||                    |:
Mouse  1885 EMMEW------------TSYTVS----VKTSDILGAGTDANVF--------------------II 1913

  Fly   513 IFLIGFCFAVVTINGN-------YSSNFNKLVKSMVMCMCYSFGFSAQVKPSEL-----FHGGKW 565
            ||         ..||:       .|:|:||..::..    .:|.||..:....|     :|..| 
Mouse  1914 IF---------GENGDSGTLALKQSANWNKFERNNT----DTFNFSDMLSLGHLCKLRVWHDNK- 1964

  Fly   566 LGILCYGVLAFVIIVLLINVFVSLINDYFTVAKTIRDSERENRITF-FEFLVVEFSGVLGRFRKL 629
             ||.....|::|                     .::|:.|:....| .:..:.:..|.....|..
Mouse  1965 -GIFPGWHLSYV---------------------DVKDNSRDETFRFQCDCWLSKSEGDRQTLRDF 2007

  Fly   630 PCWRRNYVR---------------NGRTVAENV-----SRK-------LDSMDRQRLMRR 662
            .| ..|.:|               ||....|||     .||       :::..|||..|:
Mouse  2008 AC-ANNEIRDELEETTYEIVIETGNGGETRENVWLILEGRKNRSKEFLVENSSRQRAFRK 2066

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 Polycystin_dom 171..369 CDD:466668 20/107 (19%)
PKD_channel 370..595 CDD:462341 40/244 (16%)
Loxhd1NP_001401328.1 PLAT_repeat 43..162 CDD:238854
PLAT_repeat 172..289 CDD:238854
PLAT_repeat 296..414 CDD:238854
PLAT_repeat 426..542 CDD:238854
PLAT_repeat 554..675 CDD:238854
PLAT_repeat 684..805 CDD:238854
PLAT 816..>896 CDD:412108
PLAT_repeat 1026..1146 CDD:238854
PLAT_repeat 1180..1300 CDD:238854
PLAT_repeat 1311..1437 CDD:238854
PLAT_repeat 1465..1585 CDD:238854
PLAT 1634..1749 CDD:412108 79/449 (18%)
PLAT_repeat 1763..1880 CDD:238854 25/150 (17%)
PLAT_repeat 1890..2010 CDD:238854 31/180 (17%)
PLAT 2023..2124 CDD:412108 11/43 (26%)
PLAT_repeat 2159..2277 CDD:238854
Blue background indicates that the domain is not in the aligned region.

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