DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and pkd-2

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_502838.3 Gene:pkd-2 / 178424 WormBaseID:WBGene00004035 Length:716 Species:Caenorhabditis elegans


Alignment Length:695 Identity:145/695 - (20%)
Similarity:275/695 - (39%) Gaps:161/695 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 DEMDEKEERRDFLKQRLINKRANLMLTSRYRNYKLNDQYKMIAHDLFIYGPYFLCLMCLVLVTRD 148
            :|.:..:::....|:.:...:|  :|.|.:.  |.:.:.|:.|......|.|.:.|:.||.|...
 Worm    33 EEYEHDKKKNPAQKEGISFSQA--LLASGHE--KSDGKIKLTARSFMEVGGYAVFLIVLVYVAFA 93

  Fly   149 QT---LYHNTRIITDLFMYNHTDYTG---LQEVYFLNQLFDFIESTLVLAF----NSNSTESGSP 203
            |.   .|:.:::::|||:.: |..:|   ......::.::|::...|:...    .||||::.:.
 Worm    94 QNSIQSYYYSKVMSDLFVAS-TGASGAPAFGSCTSMDNIWDWLSQVLIPGIYWTETSNSTDNENM 157

  Fly   204 GWAHAEQSVLLGVMRLRQLRVSNPQVGLGPPKFSDTYYMPDWQLPYRKLHYSDKYWRIYEPWIPI 268
            .:   .::.|||..|:|.|:|:|....:          |..:|...::...:      ||..:..
 Worm   158 IY---YENRLLGEPRIRMLKVTNDSCTV----------MKSFQREIKECFAN------YEEKLED 203

  Fly   269 K--MGFEFLDAL-------LMNFDHVGSLNSYPELAGYVSLL-ARSAANSMKVIDYLSENHWLTL 323
            |  :|...:||.       |.|...||::.||.. .|:|..| ...:..:...|..|..|.|:..
 Worm   204 KTMVGDGSVDAFIYATAKELENLKTVGTIASYGG-GGFVQRLPVAGSTEAQSAIATLKANRWIDR 267

  Fly   324 NTSAVFIDFTLYNVDVNLFSICTLRVEKTPFGGIVPDVQVDSAKLLENVDQMPY--TGLLALLI- 385
            .:.|:.:||.|||.::|||.:..|..|....||:     :.:.||: ..|.:.|  :|...::| 
 Worm   268 GSRAIIVDFALYNANINLFCVVKLLFELPASGGV-----ITTPKLM-TYDLLTYQTSGGTRMMIF 326

  Fly   386 ------YVLVFIQFAQTLAVKLWYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKV 444
                  ::|.|| |.:..|:.. :..|.|...||.:|:.:...:|..::|.|.|.....:.:..|
 Worm   327 EGIFCGFILYFI-FEELFAIGR-HRLHYLTQFWNLVDVVLLGFSVATIILSVNRTKTGVNRVNSV 389

  Fly   445 --EGASKMEFIDFRRPSRMHQLTTITIGFLICITTLRLWRVLQFASVFKLFTR---TLYLAWSAV 504
              .|.:...|.|.......:      :....|:..:...:|.:|.||.|..::   ||..:...:
 Worm   390 IENGLTNAPFDDVTSSENSY------LNIKACVVFVAWVKVFKFISVNKTMSQLSSTLTRSAKDI 448

  Fly   505 ASTAIAIVIFLIGF------CFAVVTINGNYSSNFNKLVKSMVMCMCYSFGFSAQVKPSELFHGG 563
            ...|:...:|...|      ||.  |...:||:.:|... :::..:...|.|||      |....
 Worm   449 GGFAVMFAVFFFAFAQFGYLCFG--TQIADYSNLYNSAF-ALLRLILGDFNFSA------LESCN 504

  Fly   564 KWLGILCYGVLAFVIIVLLINVFVSLINDYFTVAK------------------------------ 598
            ::.|...:....|.:..:|:|:|:::|||.:...|                              
 Worm   505 RFFGPAFFIAYVFFVSFILLNMFLAIINDSYVEVKAELARKKDGEGILDWFMNKVRGLTKRGKRP 569

  Fly   599 -------TIRD----------SERENRITFFEFLVVEFS---------GVLGRFRKLPCWRRNYV 637
                   |..|          :|::....|..|.|...:         .:.....::...:|||:
 Worm   570 DAPGEDATYEDYKLMLYRAGYAEKDINEAFTRFNVTSMTEHVPEKVAEDIADEVARMTEQKRNYM 634

  Fly   638 RNGRTVAENVSRKLDSM--------DR--------QRLMRRRLRQ 666
            .|.|..| |::|::|.|        ||        |.:.::|::|
 Worm   635 ENHRDYA-NLNRRVDQMQESVFSIVDRIEGVNATLQTIEKQRVQQ 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 103/461 (22%)
pkd-2NP_502838.3 PKD_channel 119..538 CDD:285288 102/461 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46093
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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