DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv3 and LOXHD1

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:NP_001371403.1 Gene:LOXHD1 / 125336 HGNCID:26521 Length:2273 Species:Homo sapiens


Alignment Length:522 Identity:87/522 - (16%)
Similarity:164/522 - (31%) Gaps:194/522 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 SDKYWRIYEPWIPIKMGF------EF----LDALLMNFDHVGSLNSYPELAGYVSLLARSA-ANS 308
            |.:.|..|...   |.||      ||    ||..::....:|...:.||....|..|..:. ...
Human  1659 SKRIWLDYPRG---KRGFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQG 1720

  Fly   309 MKVIDYLSENHWLTLN-----TSAVF--IDFTLYNVDVNLFSICTL------------RVEKTPF 354
            .|.:  |:.|.||..:     ||.||  :|..:.|:.|.:....|:            .:..|.:
Human  1721 TKYM--LNCNCWLAKDRGDGITSRVFDLLDAMVVNIGVKVLYEMTVWTGDVVGGGTDSNIFMTLY 1783

  Fly   355 G--GIVPDVQVDSAK-----------LLENVDQMPYTGLLALLIYVLVFIQFAQTLAVKL----- 401
            |  |...::|:|..|           ::|.:|..|:|                 .:.:::     
Human  1784 GINGSTEEMQLDKKKARFEREQNDTFIMEILDIAPFT-----------------KMRIRIDGLGS 1831

  Fly   402 ---WYEPHLLKSVWNKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEGASKMEFIDFRRPSRMHQ 463
               |:...:|....|..||.:|.....:..... :::||..|...::....||:           
Human  1832 RPEWFLERILLKNMNTGDLTMFYYGDWLSQRKG-KKTLVCEMCAVIDEEEMMEW----------- 1884

  Fly   464 LTTITIGFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGFCFAVVTINGN 528
                 ..:.:.:.|..:......|:||                    |:||         ..||:
Human  1885 -----TSYTVAVKTSDILGAGTDANVF--------------------IIIF---------GENGD 1915

  Fly   529 -------YSSNFNKLVKSMVMCMCY----SFGFSAQVKPSELFHGGKWLGILCYGVLAFVIIVLL 582
                   .|:|:||..::......:    |.|...:::   ::|..|  ||.....|::|     
Human  1916 SGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLR---VWHDNK--GIFPGWHLSYV----- 1970

  Fly   583 INVFVSLINDYFTVAKTIRDSERENRITFFEFLVVEFSGVLGRFRKLPCWRRNYVRNGRTVAENV 647
                            .::|:.|:....|                :..||......:|:||.:..
Human  1971 ----------------DVKDNSRDETFHF----------------QCDCWLSKSEGDGQTVRDFA 2003

  Fly   648 ---SRKLDSMDRQRLMRRRLRQGRHHVSRPVSAEDALLEYKDRGDKMVNVHYILNIQLTLIRMFL 709
               ::..|.::.                   :..:.::|..:.|:...||..||..:....:.||
Human  2004 CANNKICDELEE-------------------TTYEIVIETGNGGETRENVWLILEGRKNRSKEFL 2049

  Fly   710 FD 711
            .:
Human  2050 ME 2051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 70/401 (17%)
LOXHD1NP_001371403.1 PLAT_repeat 44..162 CDD:238854
PLAT_repeat 172..289 CDD:238854
PLAT_repeat 296..414 CDD:238854
PLAT_repeat 425..542 CDD:238854
PLAT_repeat 554..675 CDD:238854
PLAT_repeat 684..805 CDD:238854
PLAT 816..>896 CDD:412108
PLAT_repeat 1022..1142 CDD:238854
PLAT_repeat 1175..1295 CDD:238854
PLAT_repeat 1306..1432 CDD:238854
PLAT_repeat 1460..1580 CDD:238854
PLAT 1629..1744 CDD:412108 22/89 (25%)
PLAT_repeat 1758..1875 CDD:238854 20/134 (15%)
PLAT_repeat 1885..2005 CDD:238854 29/190 (15%)
PLAT 2018..2119 CDD:412108 8/34 (24%)
PLAT_repeat 2154..2272 CDD:238854
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3599
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.