DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and pkd1l3

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:XP_017949004.2 Gene:pkd1l3 / 101734692 -ID:- Length:1080 Species:Xenopus tropicalis


Alignment Length:652 Identity:130/652 - (19%)
Similarity:265/652 - (40%) Gaps:97/652 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KFKTMLVSIVIVLIFQFLIGDPIKFVILSI-----------DRALWPPRIY----IPPRCDKDEM 86
            |..:.|:|:::.|.....:..|:|..|.::           |.|....:::    :...|...|:
 Frog   498 KATSWLISMLLSLFHSLFLLPPVKAFIQTVFMFRVLRRSTMDDAAEEQQLHGILSLFANCPDWEL 562

  Fly    87 DEKEERRDFLKQRLINKRANLMLTSRYRNYKLNDQYKMIAHDLFIYGPYFLCLMCLVLVTRDQTL 151
            ....:.:|.:....:||    .:||..|...:..:...:..::.::..:.:..|.:....:....
 Frog   563 SGCRDPQDPIYCSPVNK----AITSLKRQKLIEKRLYRLVLEIAVHVVFLIMTMIMAYADKSPNE 623

  Fly   152 YHNTRIITDLFMYNHTDYTGLQEVYFLNQLFDFIESTLVLAFNSNSTESGSPGWAHAEQSVLLGV 216
            |:....:::.|....:....:::.|      .:..|||:....|..|     |:.......|||.
 Frog   624 YNLNIAVSNSFSSTFSQIGNIEDFY------SWTSSTLLPNLYSQYT-----GFITDGNCFLLGS 677

  Fly   217 MRLRQLRVSNPQVGLGPPKFSDT-YYMPDWQLPYRKLHYSDKYWRIYEPWIPIKMGFEFLDALLM 280
            .|:||||.:..|..:|     || :|..:| ||..:....||.|:.|            .:..|:
 Frog   678 PRIRQLRRAQSQYSIG-----DTGHYKAEW-LPLGRNDTPDKEWKYY------------TEKELV 724

  Fly   281 NFDHVGSLNSYPELAGYVSLLARSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSIC 345
            .:...|.|..|.. .|:|:.|..:..|:..::.:|..|.||...|.|||::|.:||.:||||.:.
 Frog   725 GYPIWGQLGWYSG-GGFVAELGNNIINASSILMWLQTNQWLDTYTKAVFVEFNVYNANVNLFCLA 788

  Fly   346 TLRVEKTPFGGIVPDVQVDSAKLLENVDQMPYTGLLALLIYVLVFIQ--FAQTLAVK--LWYEPH 406
            |..:|.:..|..:..|.:...||..:...:..:..::.:|::::.:.  ..|.|.:|  .|   .
 Frog   789 TFIMETSAIGNFLTSVDLQIRKLSWSTTDIFSSQFISYIIFLIIVLYNIIQQGLLIKKQKW---S 850

  Fly   407 LLKSVWNKLDLFIFMVNV----LVVVLVVLRESLVASMMKKVEGASKMEFIDFRRPSRMHQLTTI 467
            .|.::.|.|||.|.|:::    |.:.|.:|.:..:....:     .:..|:.|...:....:...
 Frog   851 YLTNIKNLLDLSIIMISICNTGLYIKLALLCQRDINRYQQ-----DRTRFVSFYETAIGESIHGY 910

  Fly   468 TIGFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGFCFAVVTING----N 528
            :|.||:.:.|.:||.:|.......|...||..||..:....|||:|.::.:......:.|    :
 Frog   911 SIAFLVSLMTAKLWSLLSLNPNLHLIMVTLRKAWDEIIYFLIAIIIIIVAYSITCNVLYGWKIYS 975

  Fly   529 YSSNFNKLVKSMVMCMCYSFGFSAQVKPSELFHGGKWLGILCYGVLAFVIIVLLINVFVSLINDY 593
            |.:.|:..| ::...:...|.:...:..|.:      :|.|........::.:|:|:|:|.|...
 Frog   976 YRTFFDTAV-TIFSLLIGIFNYDQVLDLSPV------IGSLLITTYVIFLVFVLVNIFLSAILAV 1033

  Fly   594 FTVAKTIRDSERENRITFFEFLVVEFSGVLGRFRKLPCWRRNYVRNGRTVAENVSRKLDSMDRQR 658
            |:..:......::..:.  :.|:::.||:.                  .:.:|..|..|:...::
 Frog  1034 FSKERQCPTPHKDKDVV--DLLMLKLSGLF------------------VIHKNTKRSDDATSEEK 1078

  Fly   659 LM 660
            .|
 Frog  1079 PM 1080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 102/437 (23%)
pkd1l3XP_017949004.2 PLAT 66..183 CDD:412108
PKD_channel 638..1035 CDD:400395 102/441 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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