DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and pkd1l2b

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:XP_021333711.1 Gene:pkd1l2b / 100537993 ZFINID:ZDB-GENE-141222-87 Length:1901 Species:Danio rerio


Alignment Length:680 Identity:137/680 - (20%)
Similarity:264/680 - (38%) Gaps:127/680 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WAMFAITVG--IIIGCMICIAVFA---GFQHEDVKFKTMLVSIVIVLIFQFLIGDPIKFVILSID 67
            |.::   ||  ::||..:....|.   |.::...:..:.::|.|..........:|:|.|.:.|.
Zfish  1270 WFVY---VGWVLVIGTSVISGYFTMLYGLKYGKDRSVSWIISNVTGFTQSLCFTEPVKVVFIGIF 1331

  Fly    68 RALWPPRIYIPPRCDKDEMDEKEER----RDFLKQRLINKRANLMLTSRY-------------RN 115
            .||...::    ..:.:|:|..:::    .|.|.:....:|.   .|..|             ||
Zfish  1332 FALVMKKV----EAEDEEVDTLQKKTTAGSDGLSEVCFAQRD---CTQSYYQPPPPGDIEKLRRN 1389

  Fly   116 YKLNDQYKMIAHDLFIYGPYFLCLMCLVLVTRDQTLYHNTRIITDLFMYNHTDYTGLQEVYFLNQ 180
            .....:.:.:..::.|:..:...|:.:....:|...::.|:.|...|.      .|:.:....|.
Zfish  1390 MIKQQKAQALVMEVLIFLGFLSMLLLVAYGQQDPNAFYLTQHIQQSFS------KGISDSMKTND 1448

  Fly   181 LFDFIESTLVLAFNSNSTESGSPGWAHAEQSVLLGVMRLRQLRVSN-----PQVGLGPPKFSDTY 240
            :|.:..:.|:     .:.....||:.....|.|:|..|:||:||..     .:|.|......:|.
Zfish  1449 VFVWANTVLL-----KNLFGQYPGFITDGNSKLVGNARIRQVRVKKDTCKVAKVMLHTVSQCNTP 1508

  Fly   241 YM----------PDWQLPYRKLHYSDK---YWRIYEPWIPIKMGFEFLDALLMNFDHVGSLNSYP 292
            |.          |.|: .:..::.|::   .|: |:....:|       ||     .|..|.:..
Zfish  1509 YSWGNEDMMSYGPGWE-EFNSVNGSEEGITAWQ-YQSQSTLK-------AL-----PVWGLTALY 1559

  Fly   293 ELAGYVSLLARSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSICTLRVEKTPFGGI 357
            ...|||..|.....|:...:.||..:.||...|.|||::||:||.:|:||.|.||.:|.:..|..
Zfish  1560 RGGGYVMDLGPDKQNATMKLQYLFNSTWLDEYTRAVFVEFTVYNANVDLFCIVTLILESSAVGAF 1624

  Fly   358 VPDVQVDSAKLLENVDQMPYTG-----LLALLIYVLVFIQFAQTLAVKL-----WYEPHLLKSVW 412
                  ....:|:||......|     |:|..:...:|:.:...|..||     |   ...::.|
Zfish  1625 ------QFRSVLQNVSLYSSVGSFMSFLMASRVIYFLFVVYYMFLQGKLLKRQKW---AYFRNKW 1680

  Fly   413 NKLDLFIFMVNVLVVVLVVLRESLVASMMKKVEG--------ASKMEFIDFRRPSRMHQLTTITI 469
            |.||:         .::::...||...:.|.|:|        ..|.:|..|...:.:.......:
Zfish  1681 NLLDM---------AIIILSWSSLSLFIQKTVQGNIDIQYYQKHKNQFPSFHDTAAVDATLRYVM 1736

  Fly   470 GFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGFCFAVVTINGNYSSNFN 534
            .||:.:..::||.:|:.:....:...:|..||..:::..:.|.|.|:.:..|...|.|.....:.
Zfish  1737 AFLVLLGCVKLWHLLRLSPKLYVIASSLQRAWDDMSTLTVVIFIILLAYSLACNLIFGWELYTYR 1801

  Fly   535 KLVKSMVMCMCYSFGFSAQV---KPSELFHGGKWLGIL----CYGVLAFVIIVLLINVFVSLIND 592
            .|..:      ::..||.|:   ...|:.:....||.:    |..:..||::.|.|::.:..:.:
Zfish  1802 TLPDA------FTAIFSLQIGIFNYDEVMNSNPALGAVIISSCVLIATFVVLSLFISIILMAVTE 1860

  Fly   593 YFTVAKTIRDSERENRITFFEFLVVEFSGV 622
               ..:..:.||.|..:......::.|.|:
Zfish  1861 ---ERENHQPSEEEETVELVMMKIMSFFGI 1887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 102/467 (22%)
pkd1l2bXP_021333711.1 CLECT 33..150 CDD:153057
Gal_Lectin 164..245 CDD:307994
GPS 759..798 CDD:307782
PLAT_polycystin 869..988 CDD:238850
PKD_channel 1437..1860 CDD:332708 102/471 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10877
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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