DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brv3 and pkd1

DIOPT Version :9

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:XP_017952982.2 Gene:pkd1 / 100494429 XenbaseID:XB-GENE-483409 Length:4354 Species:Xenopus tropicalis


Alignment Length:797 Identity:154/797 - (19%)
Similarity:300/797 - (37%) Gaps:221/797 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 IGCMICIAVFAGFQHEDVKFKT-----MLVSIVIVLIFQFLIGDPIKFVILSIDRALWPPRIYIP 78
            :.|.:.:..||......|.|.:     .|:|.:...:..|.|.:|:|.:..::..||...|::  
 Frog  3546 LSCFLLLCCFAVSSWIGVGFTSSVGLMWLISGIFSFLCSFFILEPLKVLFEALYFALVAKRLH-- 3608

  Fly    79 PRCDKDEMDEKEERRDFLKQRLINKRANLMLT------------SRYRNYKLNDQYKMIAHDLFI 131
                       .|..|.|.:..|.::.:..:|            :|....|:...::|: .:|.:
 Frog  3609 -----------PEEEDTLVECPIVEQVSERITKVRPPQGFALFQAREEAQKVKLLHRML-KNLLV 3661

  Fly   132 YGPYFLCLMCLVLVT------RDQTLYHNTRIITDLFMYNHTDYTGLQEVYFLNQLFDF----IE 186
            :..:||    ::|:|      ::.:.|        |...:.:...|..:...:.:..:|    .|
 Frog  3662 FMLFFL----VILITNYGEAPKNNSAY--------LLQRSISQELGTHKFLHIKRSDEFWVWASE 3714

  Fly   187 STLVLAFNSNSTESGSPGWAHAEQSVLLGVMRLRQLRVSNP----------QVGLGPPKFSDTYY 241
            ..|....::...:.|        .|.:|||.||||:|:...          ..|...|:..|...
 Frog  3715 MLLPYVHHNQPLQQG--------YSSMLGVARLRQIRLKEALPTSCSLQLFSAGRSCPELFDDAI 3771

  Fly   242 MPDWQLPYRKLHYSDKYWRIYEPWIPIKMGFEFLDALLMNFDHVGS----LNSYPELAGYVSLLA 302
            .....||  .|::|      |.|  |               ||.|:    ..|:.:.:|||.||.
 Frog  3772 FKSATLP--SLNWS------YSP--P---------------DHTGAWYWGFLSFYDTSGYVQLLQ 3811

  Fly   303 RSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSICTLRVEKTPFGGIVPDVQVDSAK 367
            .|..::.::::.|.:::|:...|.|:|::|:||:..|.|::..||.:|....|..:|.|.:.:..
 Frog  3812 GSQKDNEELLEELQQSYWIDNLTRALFVEFSLYSPGVELYASVTLLLEFPLAGRALPSVNIRAFP 3876

  Fly   368 LLENVDQMPYTG---LLALLIYVLVFIQF---AQTLAVK---LWYEPHLLKSVWNKLDLFIFMVN 423
            ||...     :|   ||.:::::::|:.:   ::.|.::   |.|    ....||.:...:.::.
 Frog  3877 LLRLT-----SGTHLLLVMMVFLMMFVVYFVLSECLIIRKEGLQY----FTRFWNYVQWLLTVLA 3932

  Fly   424 VLVVVLVVLRESLVASM----MKKVEGASKMEFIDFRRPSRMHQLTTITIGFLICITTLRLWRVL 484
            |..||:.:.:.||....    :|..|....:..:.| ..:..|.|:    ..::.:.|::..:.:
 Frog  3933 VCTVVVYLSKASLADRQWDRYLKDKEAFVSLYQVGF-LGNTFHSLS----ASILFVLTVKAAQQM 3992

  Fly   485 QFASVFKLFTRTLYLAWSAVASTA-----IAIVIFLIGFCFAVVTINGNYSSNFNKLVKSMVMCM 544
            :|...:..|.:||.||...:.:.:     :.:|...:||..        :||::.|.        
 Frog  3993 RFIREWSAFGKTLSLAARELCAASGAVFGLVLVYAQLGFLL--------FSSSWEKF-------- 4041

  Fly   545 CYSFGFS---------AQVKPSELFHGGKWLGILCYGVLAFVIIVLLINVFVS-LINDYFTVAKT 599
             :|||.|         ..|.....|.....:..|.:.....:.:.:|:.:|.: |||.|      
 Frog  4042 -HSFGSSILTLFAVARGNVSLKAPFPYSSTISHLYFASYLVLEVWILLRLFAAVLINSY------ 4099

  Fly   600 IRDSERENRITFF-------EFLVVEFSGVLGRFRKLPCWR--------RNYVR----------- 638
                 |:.|:..|       ::.:||..     .|:|..|.        |:.||           
 Frog  4100 -----RQVRLEMFRPAFEPQDYEMVELF-----LRRLRIWMGVSKVKEFRHKVRFEGMEPLPSRS 4154

  Fly   639 -------NGRTVA-----------ENVSRKLDSMDRQRLMRRRLRQGRHHVSRPVSAEDALLEYK 685
                   .|.|.:           ..:|.:|||:  ..:..|...:...:|.|.|...||||...
 Frog  4155 SSDSKSIRGLTPSAASDTSSSSSFSTISSQLDSL--SAISARERAEIDANVQRLVPVLDALLSQF 4217

  Fly   686 DRGDKMVNVHYILNIQL 702
            |:.::.....|.:...|
 Frog  4218 DQVNQATEDVYRIECSL 4234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 PKD_channel 170..595 CDD:285288 97/470 (21%)
pkd1XP_017952982.2 LRR_8 <83..114 CDD:404697
leucine-rich repeat 83..103 CDD:275378
leucine-rich repeat 104..127 CDD:275378
PCC 108..2722 CDD:188093
leucine-rich repeat 128..140 CDD:275378
GPS 2996..3045 CDD:413374
PLAT_polycystin 3103..3222 CDD:238850
PKD_channel 3699..4102 CDD:400395 97/477 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276906at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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