DRSC/TRiP Functional Genomics Resources

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Protein Alignment brv3 and loxhd1b

DIOPT Version :10

Sequence 1:NP_001284831.1 Gene:brv3 / 31246 FlyBaseID:FBgn0040333 Length:750 Species:Drosophila melanogaster
Sequence 2:XP_001920640.4 Gene:loxhd1b / 100150283 ZFINID:ZDB-GENE-081104-370 Length:2268 Species:Danio rerio


Alignment Length:247 Identity:41/247 - (16%)
Similarity:86/247 - (34%) Gaps:63/247 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 RCDKDEMDEKEERRDF-LKQRLINKRANL----------MLTSRYRNYKLNDQYKMIAHDLFIYG 133
            :.:|::.:.:|:..|. .|::..:|:.|.          ....:.:..|..|..::..::|..|.
Zfish    17 KAEKEDSEPEEDDEDSRKKKKKKSKKGNADSDDDGKKSKDKKKKKKKSKTEDYVEIYENELRNYE 81

  Fly   134 PYFLCLMCLVLVTRDQTLYHNTRIITDLFMYNHTDYTGLQEVYFLNQLFDF-------IESTLVL 191
            |        ..|...:..||..::...:.:....:..|.....|:....|:       :.|....
Zfish    82 P--------EKVENYEDEYHKKKVYEVVTITGDVNGAGTDANVFVTLFGDYGITPKLHLSSKNRT 138

  Fly   192 AFNSNSTESGSPGWAHAEQSVLLGVMR--------LRQLRVSNPQVGLGPPKFSDTYYMPDWQLP 248
            :|..|.|:                |.|        |:::|:.:...||....|.|...:.|...|
Zfish   139 SFEKNKTD----------------VFRVKTHNVGPLKKIRIEHDNTGLNASWFLDRVVVTDMNRP 187

  Fly   249 YRKLHYSDKYWRIYEPWIPIKMGFEFLDALLMNFDHVGSLN--SYPELAGYV 298
            :.:.:::...|          :..:..|.|.:. |.:|||:  ..|:...||
Zfish   188 HLRFYFACNNW----------LSRDEGDGLYVR-DLLGSLDPMDMPKYNKYV 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
brv3NP_001284831.1 Polycystin_dom 171..369 CDD:466668 27/145 (19%)
PKD_channel 370..595 CDD:462341
loxhd1bXP_001920640.4 None
Blue background indicates that the domain is not in the aligned region.

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