DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp3A and tspan5

DIOPT Version :10

Sequence 1:NP_525054.2 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_001072198.1 Gene:tspan5 / 779644 XenbaseID:XB-GENE-868310 Length:268 Species:Xenopus tropicalis


Alignment Length:288 Identity:115/288 - (39%)
Similarity:167/288 - (57%) Gaps:26/288 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GRGYSGIEVHEVMHPHHFTYVSQCVKYMIFLLNFVFWLFGGLLLGIGVYAFRDKWEDANGS--VR 81
            |:.|.|.|            ||.|:||.||..|.:|||.|...||:|::|:.:|...:|.|  ..
 Frog     3 GKHYKGPE------------VSCCIKYFIFGFNVIFWLLGITFLGVGLWAWSEKGVLSNISSITD 55

  Fly    82 LENFYDVFLNISLVMILAGTVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVC 146
            |..|..|:|     .::.|.|:|::.|:||:||||||||||||:|:.|.:.|.||:...::.||.
 Frog    56 LGGFDPVWL-----FLVVGGVMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVF 115

  Fly   147 PQYMNTFLEKQFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNC--SSPSV 209
            ..::...|: .|.:..|.:||||.||||.|||.|:.::|||.  .|..||:.|.||||  ::.|.
 Frog   116 KDWIKDQLQ-FFINNNIRAYRDDIDLQNLIDFTQEYWQCCGA--FGADDWNLNIYFNCTDANASR 177

  Fly   210 EKCGVPYSCCINATDISSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNA 274
            |:||||:|||  ..|.:..::|..|||.|:..|..:..:.|.|.||:.....|.:.||.::||..
 Frog   178 ERCGVPFSCC--TKDPAEDVINTQCGYDVRQKPELDQQETIHTKGCVPQFEKWLQDNLTIVAGVF 240

  Fly   275 LGIALIQLLVIYLAKTLEGQIELQKSRW 302
            :||||:|:..|.||:.|...||..::.|
 Frog   241 IGIALLQIFGICLAQNLVSDIEAVRASW 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_525054.2 Tetraspanin 43..>187 CDD:459767 61/145 (42%)
penumbra_like_LEL 144..267 CDD:239411 49/124 (40%)
tspan5NP_001072198.1 Tetraspanin 15..258 CDD:459767 104/252 (41%)
TM4SF9_like_LEL 113..233 CDD:239412 49/124 (40%)

Return to query results.
Submit another query.