DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp3A and tspan15

DIOPT Version :9

Sequence 1:NP_001245504.1 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_001039054.1 Gene:tspan15 / 733836 XenbaseID:XB-GENE-5960404 Length:297 Species:Xenopus tropicalis


Alignment Length:284 Identity:105/284 - (36%)
Similarity:153/284 - (53%) Gaps:27/284 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 IEVHEVMHPHHFTYVSQCVKYMIFLLNFVFWLFGGLLLGIGVYA--FRDKWEDANGSVRLENFYD 87
            ::..||.:...|.|:  |:|:.:.:.:.||||.|..:|.||:||  .|.|::..:|         
 Frog     1 MDASEVRYCSRFNYL--CLKFALVVYSTVFWLIGAFVLAIGIYAEVERQKYKTLHG--------- 54

  Fly    88 VFLNISLVMILAGTVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNT 152
            :||..|:::||.|.::|:|||.|.:.:||:|..|||.:...|::..:||:...|:..:.......
 Frog    55 IFLAPSIILILLGVLMFVVSFIGVLASLRDNVCLLKVFMYTLVVCLILELVGGIIALIFRHQTMD 119

  Fly   153 FLEKQFTHKI---IHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNCSSPSVEKCGV 214
            .|    .|.|   |.:|.||.|.:|.:||.|::|:|||  ...|.||.||||..||:|....|||
 Frog   120 LL----NHNIGKGIRNYYDDLDFKNIMDFTQKQFRCCG--GKDYLDWKKNEYHECSAPGPLACGV 178

  Fly   215 PYSCCI-NATDISSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNALGIA 278
            ||:||| |.||:    :|.||||...|....:|.|.|:..||.:.|.:|...|..::||..|||.
 Frog   179 PYTCCIRNKTDV----MNTMCGYKAMNYERLDAMKFIYVRGCTDAVIIWFLDNYTIMAGVLLGIL 239

  Fly   279 LIQLLVIYLAKTLEGQIELQKSRW 302
            |.|.|.|.|......:||...|.|
 Frog   240 LPQFLGILLCLLYITRIEDIISEW 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_001245504.1 Tetraspannin 42..295 CDD:278750 97/258 (38%)
penumbra_like_LEL 144..267 CDD:239411 50/126 (40%)
tspan15NP_001039054.1 penumbra_like_LEL 111..228 CDD:239411 50/126 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1416189at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.