DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp3A and prph2b

DIOPT Version :10

Sequence 1:NP_525054.2 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_571642.1 Gene:prph2b / 559209 ZFINID:ZDB-GENE-000616-9 Length:342 Species:Danio rerio


Alignment Length:307 Identity:74/307 - (24%)
Similarity:125/307 - (40%) Gaps:69/307 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 IFLLNFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAGTVIFLV-SFSG 110
            ::||.::..:.|.|:...|::.   |.|....|..::|....|  :..::||.|.|...| :|.|
Zfish    20 LWLLYWLSVMAGILIFSTGIFL---KIELRKRSEMMDNNESHF--VPNLLILVGLVACGVNTFGG 79

  Fly   111 --CVGALRENTF-----LLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRD 168
              |..:|....|     :||.|....::|.::....|::||:....::..|.:...:.:  .|..
Zfish    80 KVCHDSLDTVKFTKWKTMLKAYMSGCVIFCIVLFVTALLCFLMQISLHFALAEGLKNGM--KYYK 142

  Fly   169 DPD------LQNFIDFAQQEFKCCGLSNSGYQDWSK-----NEYFNCSSPSVE------------ 210
            |.|      ::..:|..|.||:|||  |:.|:||.:     |.|.:.|:..::            
Zfish   143 DTDTPGRCFMKRTLDMTQIEFRCCG--NNNYKDWFEIQWISNRYLDFSNDEIKDRVQSNVEGKFL 205

  Fly   211 KCGVPYSCCINATD---ISSGLVNIMCGYGVQNAPVPEATKL-IWTSGCIEIVRVWAEHNLYVIA 271
            ...||:|||...:.   |...|.|....|...:    ....| :||.||.|     |..:.|...
Zfish   206 MDSVPFSCCNPGSPRPCIQHHLTNNSAHYSYDH----HTEDLNVWTRGCRE-----ALVSYYGGM 261

  Fly   272 GNALGIALIQLLVI----------YLAKTLE-----GQIELQKSRWL 303
            .|::| |.:.|.:|          ||:.:||     ...|.:...||
Zfish   262 MNSIG-AFVLLFIIMQAVVTVGLQYLSTSLETLTDPENPESESEGWL 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_525054.2 Tetraspanin 43..>187 CDD:459767 36/153 (24%)
penumbra_like_LEL 144..267 CDD:239411 35/149 (23%)
prph2bNP_571642.1 Tetraspanin 16..>167 CDD:459767 36/153 (24%)
peripherin_like_LEL 120..262 CDD:239415 36/154 (23%)

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