DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp3A and Tsp74F

DIOPT Version :9

Sequence 1:NP_001245504.1 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_524132.1 Gene:Tsp74F / 39995 FlyBaseID:FBgn0036769 Length:236 Species:Drosophila melanogaster


Alignment Length:262 Identity:61/262 - (23%)
Similarity:112/262 - (42%) Gaps:43/262 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 QCVKYMIFLLNFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISL------VMILA 99
            |.|||.:|:.|||.::.|.::..:.::...|:           :|.:..|..:|      |:::.
  Fly    12 QFVKYSLFIANFVIFVGGAIVFCLTLWTLVDR-----------SFVNELLGTNLFSGAVYVLLVT 65

  Fly   100 GTVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIH 164
            ..:|.||||.|||||.:|...||..|.:.:.|.|:..:...::.:|..:.:...: :|.....:.
  Fly    66 SIIICLVSFLGCVGAGKEVKCLLLTYFIIVALVFVTMLIGGVLGYVFRERVQQTM-RQEMRSTMA 129

  Fly   165 SYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNCSSPSVEKCGVPYSCCINATDISSGL 229
            .|....::....|..|:..:|||:..  :.||  |.|    .|      ||.|||          
  Fly   130 LYGSRREITQAWDLTQERLQCCGVDT--WHDW--NRY----GP------VPESCC---------- 170

  Fly   230 VNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQ 294
            ..:..|...:....|..|.| :..||:.:...:...:..||.|.::.:|::.:..:..:..|...
  Fly   171 QELFGGQRKECTIFPTITNL-YNQGCLYVTTNFIRDHAAVIGGTSIAVAILMIFGMIFSCLLFNM 234

  Fly   295 IE 296
            ||
  Fly   235 IE 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_001245504.1 Tetraspannin 42..295 CDD:278750 58/258 (22%)
penumbra_like_LEL 144..267 CDD:239411 24/122 (20%)
Tsp74FNP_524132.1 Tetraspannin 14..231 CDD:395265 57/253 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.