DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp3A and Tsp42El

DIOPT Version :9

Sequence 1:NP_001245504.1 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:NP_523638.1 Gene:Tsp42El / 35622 FlyBaseID:FBgn0033134 Length:217 Species:Drosophila melanogaster


Alignment Length:253 Identity:69/253 - (27%)
Similarity:114/253 - (45%) Gaps:62/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 VKYMIFLLNFVFWLFGGLLL---GIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAGTVIF 104
            :||.:||.|.::.:.|.|:|   |:|..|..|.:  |.|                ::||.||:: 
  Fly     8 IKYSLFLFNALWAILGILVLIFGGLGWGAMPDAY--AIG----------------ILILGGTIL- 53

  Fly   105 LVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRDD 169
            ::|..||.||:||:..:|..|:..||:..||     ||.|:.....:.| :|.....:.:.:..:
  Fly    54 VISLFGCCGAVRESPRMLWTYASLLLILLLL-----IVAFIILNPKDVF-KKYALQTVENQWELE 112

  Fly   170 PDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNCSSPSVEKCGVPYSCCINATDISSGLVNIM- 233
            ......:|..|:.:.|||..::  ||:...:::|.:        ||.|||.:.:.::.  :|:. 
  Fly   113 QTKPGSMDIIQKTYYCCGRDSA--QDYLDIKFWNNT--------VPSSCCKDDSCVNP--LNLYV 165

  Fly   234 --CGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNALGI-ALIQLLVIYLA 288
              |...|:.|...|||    |.|.:|    |          ..||. |:|.||.|.||
  Fly   166 RGCLIKVEEAFADEAT----TLGYLE----W----------GLLGFNAVILLLAIILA 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_001245504.1 Tetraspannin 42..295 CDD:278750 69/253 (27%)
penumbra_like_LEL 144..267 CDD:239411 27/125 (22%)
Tsp42ElNP_523638.1 Tetraspannin 7..196 CDD:278750 62/242 (26%)
tetraspanin_LEL 94..178 CDD:239401 19/96 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442964
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.