DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp3A and Tspan17

DIOPT Version :9

Sequence 1:NP_001245504.1 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:XP_006253692.1 Gene:Tspan17 / 306771 RGDID:1311167 Length:281 Species:Rattus norvegicus


Alignment Length:268 Identity:110/268 - (41%)
Similarity:158/268 - (58%) Gaps:14/268 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VSQCVKYMIFLLNFVFWLFGGLLLGIGVYAFRDK--WEDANGSVRLENFYDVFLNISLVMILAGT 101
            |..|.||.:|..|.|||:.|.|.|.||::|:.:|  ..:.:|...|.....|:|     .::.|.
  Rat    13 VGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISGLTDLGGLDPVWL-----FVVIGG 72

  Fly   102 VIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSY 166
            ::.::.|:||:||||||||||||:|:.|.|.|.||:|..|:.||...::...| ..|.:..:.:|
  Rat    73 IMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELAAGILAFVFKDWIRDQL-NLFINNNVKAY 136

  Fly   167 RDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNCS--SPSVEKCGVPYSCCINATDISSGL 229
            |||.||||.|||||:.:.|||.  .|..||:.|.||||:  :||.|:||||:|||:.  |.:..:
  Rat   137 RDDIDLQNLIDFAQEYWSCCGA--RGPNDWNLNIYFNCTDLNPSRERCGVPFSCCVR--DPAEDV 197

  Fly   230 VNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQ 294
            :|..|||.::.....|....|:|.||:.....|.:.||.|:||..:.|||:|:..|.||:.|...
  Rat   198 LNTQCGYDIRLKLELEQQGSIYTKGCVGQFEKWLQDNLIVVAGVLVAIALLQICGICLAQNLVSD 262

  Fly   295 IELQKSRW 302
            ||..|:.|
  Rat   263 IEAVKANW 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_001245504.1 Tetraspannin 42..295 CDD:278750 105/256 (41%)
penumbra_like_LEL 144..267 CDD:239411 49/124 (40%)
Tspan17XP_006253692.1 TM4SF9_like_LEL 115..235 CDD:239412 49/124 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48585
OrthoDB 1 1.010 - - D574036at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19282
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X349
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

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