DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp3A and Cd81

DIOPT Version :10

Sequence 1:NP_525054.2 Gene:Tsp3A / 31244 FlyBaseID:FBgn0040334 Length:304 Species:Drosophila melanogaster
Sequence 2:XP_063138178.1 Gene:Cd81 / 25621 RGDID:2315 Length:248 Species:Rattus norvegicus


Alignment Length:163 Identity:51/163 - (31%)
Similarity:81/163 - (49%) Gaps:19/163 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SQCVKYMIFLLNFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLE--------NFYDVFLNISLVM 96
            ::|:||::|:.||||||.||::||:.::...|  ......:.||        .||   :.| .::
  Rat     7 TKCIKYLLFVFNFVFWLAGGVILGVALWLRHD--PQTTSLLYLELGDKPAPSTFY---VGI-YIL 65

  Fly    97 ILAGTVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHK 161
            |..|.|:..|.|.||.||::|:..||..:..||::.|..|:|..|..||....:...: |||..:
  Rat    66 IAVGAVMMFVGFLGCYGAIQESQCLLGTFFTCLVILFACEVAAGIWGFVNKDQIAKDV-KQFYDQ 129

  Fly   162 IIHSYRDDPDLQN---FIDFAQQEFKCCGLSNS 191
            .:.....|.|..|   .:....:...||| ||:
  Rat   130 ALQQAVMDDDANNAKAVVKTFHETLNCCG-SNT 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp3ANP_525054.2 Tetraspanin 43..>187 CDD:459767 46/154 (30%)
penumbra_like_LEL 144..267 CDD:239411 13/51 (25%)
Cd81XP_063138178.1 None

Return to query results.
Submit another query.