DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eIF3g1 and AT2G43370

DIOPT Version :9

Sequence 1:NP_570011.1 Gene:eIF3g1 / 31243 FlyBaseID:FBgn0029629 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_850395.1 Gene:AT2G43370 / 818938 AraportID:AT2G43370 Length:333 Species:Arabidopsis thaliana


Alignment Length:105 Identity:28/105 - (26%)
Similarity:48/105 - (45%) Gaps:8/105 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 SGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLARDKNTGL 227
            :|.|.|.  .||:  |:|    |....:.:..||...||..|.|::.|.|....:.|.|...||.
plant    47 AGLYDPS--GDSK--AVG----DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGA 103

  Fly   228 CKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQ 267
            .:|:.:|.::..|:...|.|..:....|...:.|::::.|
plant   104 SRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQ 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3g1NP_570011.1 eIF3g 30..140 CDD:289149
RRM <161..>269 CDD:223796 28/105 (27%)
RRM_eIF3G_like 189..265 CDD:240854 19/75 (25%)
AT2G43370NP_850395.1 RRM_snRNP35 60..150 CDD:409683 22/88 (25%)
RRM <61..250 CDD:223796 21/83 (25%)
U2AF_lg 218..>324 CDD:273727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.