DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3g1 and hnrnpd

DIOPT Version :9

Sequence 1:NP_570011.1 Gene:eIF3g1 / 31243 FlyBaseID:FBgn0029629 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_001025523.1 Gene:hnrnpd / 594903 XenbaseID:XB-GENE-988375 Length:295 Species:Xenopus tropicalis


Alignment Length:124 Identity:30/124 - (24%)
Similarity:44/124 - (35%) Gaps:30/124 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 DTNMME------KKASAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT 200
            |..|||      ::........:||.|:                    .:|...:.|..||...|
 Frog     6 DEAMMEATTAETEETGQNEGVKIDASKT--------------------EEDEGKMFIGGLSWDTT 50

  Fly   201 EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIE----ILNGHGYD 255
            :.||::...|.|......|..|..||..:||.:|.||:.:.....:|    .|||...|
 Frog    51 KKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESEGVDKVMEQKEHKLNGKVID 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3g1NP_570011.1 eIF3g 30..140 CDD:289149
RRM <161..>269 CDD:223796 24/99 (24%)
RRM_eIF3G_like 189..265 CDD:240854 22/71 (31%)
hnrnpdNP_001025523.1 RRM1_hnRNPD 40..113 CDD:241200 22/70 (31%)
RRM2_hnRNPD 124..198 CDD:241027
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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