DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment eIF3g1 and Pabpc4

DIOPT Version :9

Sequence 1:	NP_570011.1	Gene:	eIF3g1 / 31243	FlyBaseID:	FBgn0029629	Length:	269	Species:	Drosophila melanogaster
Sequence 2:	XP_006238860.1	Gene:	Pabpc4 / 298510	RGDID:	1305015	Length:	660	Species:	Rattus norvegicus

Alignment Length:	165	Identity:	42/165 - (25%)
Similarity:	75/165 - (45%)	Gaps:	20/165 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    95 IIMQFLNSKEDEKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAMDTNMMEKKASAAAAAAVD 159
            :.::.|:...|.||.........||..|::...|:.|     ||.|    .:..:...||..|::
  Rat   101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYA----FVHFETQEAANKAIE 156

  Fly   160 APKSGK-------YVPPFLKDSQKGA-LGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSK 216
             ..:|.       :|..|....::.| ||.:.::.| .:.|.|..|.:.:.:|.||..:.|....
  Rat   157 -KMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT-NVYIKNFGEEVDDENLRELFSQFGKTLS 219

  Fly   217 MYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNG 251
            :.:.|| .:|..|||.:|.:::.:||..|:|.:||
  Rat   220 VKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNG 253

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
eIF3g1	NP_570011.1	eIF3g	30..140	CDD:289149	11/44 (25%)
		RRM	<161..>269	CDD:223796	27/99 (27%)
		RRM_eIF3G_like	189..265	CDD:240854	20/63 (32%)
Pabpc4	XP_006238860.1	PABP-1234	11..640	CDD:130689	42/165 (25%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825	17/80 (21%)
		RRM3_I_PABPs	190..269	CDD:240826	21/66 (32%)
		RRM4_I_PABPs	293..370	CDD:240827
		PABP	572..639	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910