DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3g1 and RAVER1

DIOPT Version :9

Sequence 1:NP_570011.1 Gene:eIF3g1 / 31243 FlyBaseID:FBgn0029629 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_597709.3 Gene:RAVER1 / 125950 HGNCID:30296 Length:739 Species:Homo sapiens


Alignment Length:129 Identity:35/129 - (27%)
Similarity:60/129 - (46%) Gaps:12/129 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 YKGTAMDTNMMEKKASAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT 200
            |||||..|.:..::|.||..|         :....|::.:   |.::.:...|.:.::||..|:|
Human    92 YKGTAFVTLLNGEQAEAAINA---------FHQSRLRERE---LSVQLQP
TDALLCVANLPPSLT 144

  Fly   201 EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWS 264
            :...||||:..|...:.:|...:.||..||:.:..:.::..||.|...|.|.......|.|.|:
Human   145 QQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3g1NP_570011.1 eIF3g 30..140 CDD:289149 3/3 (100%)
RRM <161..>269 CDD:223796 25/104 (24%)
RRM_eIF3G_like 189..265 CDD:240854 22/76 (29%)
RAVER1NP_597709.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
Nuclear localization signal. /evidence=ECO:0000255 45..60
RRM1_RAVER1 59..129 CDD:241107 12/48 (25%)
RRM2_RAVER1 133..209 CDD:241109 22/76 (29%)
RRM3_RAVER1 219..306 CDD:241111
Interaction with PTBP1. /evidence=ECO:0000250 307..395
Atrophin-1 <364..635 CDD:331285
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..474
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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