DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and ghrhrl

DIOPT Version :10

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001075951.1 Gene:ghrhrl / 793334 ZFINID:ZDB-GENE-090211-1 Length:445 Species:Danio rerio


Alignment Length:485 Identity:127/485 - (26%)
Similarity:204/485 - (42%) Gaps:132/485 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 LGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVLARMNCP 240
            ||||:||:.                               |...||:::|||....|...:..||
Zfish    46 LGNLSSSSG-------------------------------CLSVWDSVVCWPSAVVGETVQSPCP 79

  Fly   241 GGFHGVD--TRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYI 303
            ..|...:  |.....|.|.:.| | |||     .||    |......|     ..:..:.:.|.:
Zfish    80 AVFSLFENNTEGVVSRNCTVTG-W-SRP-----FPP----YHVACSAE-----DNIPEESYFATV 128

  Fly   304 DIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQ---VIIR-LTLYL 364
                  :.:..||...||.:|.|::||...||.|...|..||..||...:|:   |.|: :||: 
Zfish   129 ------KLIYTVGYGASLLSLSVAVLILLLFRRLHCTRNYIHMQLFFTFILKSVAVFIKDVTLF- 186

  Fly   365 DQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFP 429
                  :.:...:.|||.:     .|:.:.|...|...:.|.|:.:|.:||::::.....:....
Zfish   187 ------SSDDTDHCSLSTV-----ACKTAVVFCHYCVMSNFFWLLVEAVYLNSLLVSVFLRRRRC 240

  Fly   430 LKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNL-TPYYWILEGPRLAVILLNFCFLVN 493
            |..|:.|||.||::...:|....:.:.||   || |:.|. :||:||::||.:..|.:||...:|
Zfish   241 LWAFALLGWGVPLVCIVLWIFSRLYFEDT---EC-WDINEDSPYWWIIKGPIVISIAVNFLLFLN 301

  Fly   494 IIRVLVMKL--RQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHF-- 554
            |||:|:.||  |..|.::.:|.|:..::.::|:||.|              |::.::|:...:  
Zfish   302 IIRILMQKLNPRLIQFNNSDQYRRLTKSTLLLIPLFG--------------THYMIFSFLPDYFN 352

  Fly   555 ----------LTSFQGFFIALIYCFLNGEVR-AVLLKSLATQLSVRGHPEWAPKRASMYSGAYNT 608
                      |.||||..:|::|||||.||: .:.|:.|..|                 .|:|  
Zfish   353 TGLRLCIELCLGSFQGLIVAILYCFLNQEVQNEIRLRWLRYQ-----------------EGSY-- 398

  Fly   609 APDTDAVQPAGDPSATGKRISPPNKRLNGR 638
                 ||.|.|   ..|.::..|..|...|
Zfish   399 -----AVVPVG---VKGSQMDTPVHRQTRR 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:397086 18/60 (30%)
7tmB1_PDFR 306..584 CDD:320389 87/297 (29%)
TM helix 1 308..333 CDD:320389 8/24 (33%)
TM helix 2 342..364 CDD:320389 9/25 (36%)
TM helix 3 391..418 CDD:320389 7/26 (27%)
TM helix 4 430..450 CDD:320389 8/19 (42%)
TM helix 5 469..498 CDD:320389 13/29 (45%)
TM helix 6 512..539 CDD:320389 6/26 (23%)
TM helix 7 546..571 CDD:320389 10/36 (28%)
ghrhrlNP_001075951.1 HRM 53..116 CDD:397086 21/104 (20%)
7tmB1_GHRHR 125..392 CDD:320398 87/302 (29%)
TM helix 1 127..152 CDD:320398 8/30 (27%)
TM helix 2 161..183 CDD:320398 7/21 (33%)
TM helix 3 202..229 CDD:320398 7/26 (27%)
TM helix 4 241..261 CDD:320398 8/19 (42%)
TM helix 5 277..306 CDD:320398 13/28 (46%)
TM helix 6 322..349 CDD:320398 8/40 (20%)
TM helix 7 354..379 CDD:320398 9/24 (38%)

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