DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and ghrhrl

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001075951.1 Gene:ghrhrl / 793334 ZFINID:ZDB-GENE-090211-1 Length:445 Species:Danio rerio


Alignment Length:485 Identity:127/485 - (26%)
Similarity:204/485 - (42%) Gaps:132/485 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 LGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWTWDTLLCWPPTPAGVLARMNCP 240
            ||||:||:.                               |...||:::|||....|...:..||
Zfish    46 LGNLSSSSG-------------------------------CLSVWDSVVCWPSAVVGETVQSPCP 79

  Fly   241 GGFHGVD--TRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYI 303
            ..|...:  |.....|.|.:.| | |||     .||    |......|     ..:..:.:.|.:
Zfish    80 AVFSLFENNTEGVVSRNCTVTG-W-SRP-----FPP----YHVACSAE-----DNIPEESYFATV 128

  Fly   304 DIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQ---VIIR-LTLYL 364
                  :.:..||...||.:|.|::||...||.|...|..||..||...:|:   |.|: :||: 
Zfish   129 ------KLIYTVGYGASLLSLSVAVLILLLFRRLHCTRNYIHMQLFFTFILKSVAVFIKDVTLF- 186

  Fly   365 DQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVFQGSFP 429
                  :.:...:.|||.:     .|:.:.|...|...:.|.|:.:|.:||::::.....:....
Zfish   187 ------SSDDTDHCSLSTV-----ACKTAVVFCHYCVMSNFFWLLVEAVYLNSLLVSVFLRRRRC 240

  Fly   430 LKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNL-TPYYWILEGPRLAVILLNFCFLVN 493
            |..|:.|||.||::...:|....:.:.||   || |:.|. :||:||::||.:..|.:||...:|
Zfish   241 LWAFALLGWGVPLVCIVLWIFSRLYFEDT---EC-WDINEDSPYWWIIKGPIVISIAVNFLLFLN 301

  Fly   494 IIRVLVMKL--RQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHF-- 554
            |||:|:.||  |..|.::.:|.|:..::.::|:||.|              |::.::|:...:  
Zfish   302 IIRILMQKLNPRLIQFNNSDQYRRLTKSTLLLIPLFG--------------THYMIFSFLPDYFN 352

  Fly   555 ----------LTSFQGFFIALIYCFLNGEVR-AVLLKSLATQLSVRGHPEWAPKRASMYSGAYNT 608
                      |.||||..:|::|||||.||: .:.|:.|..|                 .|:|  
Zfish   353 TGLRLCIELCLGSFQGLIVAILYCFLNQEVQNEIRLRWLRYQ-----------------EGSY-- 398

  Fly   609 APDTDAVQPAGDPSATGKRISPPNKRLNGR 638
                 ||.|.|   ..|.::..|..|...|
Zfish   399 -----AVVPVG---VKGSQMDTPVHRQTRR 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 18/60 (30%)
7tm_4 306..563 CDD:304433 77/275 (28%)
ghrhrlNP_001075951.1 HRM 53..113 CDD:280888 21/101 (21%)
7tm_2 127..371 CDD:278432 77/279 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290902at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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