DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdfr and CG42402

DIOPT Version :10

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001287642.1 Gene:CG42402 / 7354470 FlyBaseID:FBgn0259821 Length:747 Species:Drosophila melanogaster


Alignment Length:489 Identity:92/489 - (18%)
Similarity:169/489 - (34%) Gaps:167/489 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KAPCSGGRVRHA----DSLHIYYAVDGKMTL-----LSNILDCGGCISAQ---RFTRLLRQSGSS 98
            ||.|...:|..|    .|:.|.:|...|...     :..:....|.|.::   |...|||.|...
  Fly    55 KAACDSDQVLIACPRGTSISIEFAQYNKFVAKDGYSIEELCPGSGEIRSEIRGRTKHLLRGSIFG 119

  Fly    99 GPSPSAPTAGTFESKSMLEPTSSHSLA--TGRVPLLHDFDASTTESPGT------------YVLD 149
            .|....|:     ||.|   |:.||||  ...||..:...|:::||..:            |..|
  Fly   120 SPPLKTPS-----SKYM---TAGHSLAVPVQSVPEFNSSSATSSESISSVSPSVDDIQSTDYNTD 176

  Fly   150 GVA------RVAQLALEPTVMDAL-----------PD--SDTEQVLGNLNSSAPWNLTLASAAAT 195
            ..:      ...|.:|..||::|.           |:  ......:|:.:.::.::.:.||:.|.
  Fly   177 NASENCMWPNALQYSLLQTVVEACQKKKHCKFHGSPEFYGQGSSGVGDSSGTSSYHSSTASSNAI 241

  Fly   196 NFENC-------------------SALFVNYTLPQTGLYCN--------------WTWDTLLCWP 227
            :.:.|                   |.:..:..:.|  |.||              ..::::.|  
  Fly   242 SNDPCPKRKKIVEVAYKCRPYEFRSKVACHNDVAQ--LECNPYSRIAVYSASFGRTEYESIQC-- 302

  Fly   228 PTPAGVLARMNCPGGF---------HGVDTRKFAIRKCEL---DGRWGS--RPNATEVNPPGWTD 278
            |.|.|| ....|...:         ||       .|:|.|   ...:||  :||:.......:| 
  Fly   303 PQPQGV-REETCLASYATETVMQICHG-------RRRCNLAADANTFGSPCQPNSRMYLKVVYT- 358

  Fly   279 YGPCYKPEIIRLMQQM-----GSKDF-----DAYID--IARRTRTLEIVGLCLSLFALIVSLLIF 331
               |...::::..:.:     .|:||     |.|.|  |.:.:..              :..|..
  Fly   359 ---CVPKQVLKENKALEVEADESEDFGGDLNDLYDDELIYKESEA--------------IPKLYS 406

  Fly   332 CTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLD-QFRRGNKEAATNTSLSVIEN-----TPYLC 390
            .|..::|.|.|:                 :|.|. .....|.::.||:|| |:|.     .|.:.
  Fly   407 NTTTTVRQNGTR-----------------SLGLGFSVNSANNQSITNSSL-VVEGDRSDVNPVMT 453

  Fly   391 EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVF 424
            .::.:.||..:..::.:: :..:.|..::::.:|
  Fly   454 HSADLSLEEDQERLYFYL-LALVSLGVLISIVIF 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:397086 18/86 (21%)
7tmB1_PDFR 306..584 CDD:320389 19/125 (15%)
TM helix 1 308..333 CDD:320389 1/24 (4%)
TM helix 2 342..364 CDD:320389 2/21 (10%)
TM helix 3 391..418 CDD:320389 3/26 (12%)
TM helix 4 430..450 CDD:320389
TM helix 5 469..498 CDD:320389
TM helix 6 512..539 CDD:320389
TM helix 7 546..571 CDD:320389
CG42402NP_001287642.1 Gal_Rha_Lectin 51..261 CDD:459238 44/213 (21%)
Gal_Rha_Lectin_EVA1_EVA1C_rpt2 264..361 CDD:438686 22/112 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.