DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and CG42402

DIOPT Version :9

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001287642.1 Gene:CG42402 / 7354470 FlyBaseID:FBgn0259821 Length:747 Species:Drosophila melanogaster


Alignment Length:489 Identity:92/489 - (18%)
Similarity:169/489 - (34%) Gaps:167/489 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KAPCSGGRVRHA----DSLHIYYAVDGKMTL-----LSNILDCGGCISAQ---RFTRLLRQSGSS 98
            ||.|...:|..|    .|:.|.:|...|...     :..:....|.|.::   |...|||.|...
  Fly    55 KAACDSDQVLIACPRGTSISIEFAQYNKFVAKDGYSIEELCPGSGEIRSEIRGRTKHLLRGSIFG 119

  Fly    99 GPSPSAPTAGTFESKSMLEPTSSHSLA--TGRVPLLHDFDASTTESPGT------------YVLD 149
            .|....|:     ||.|   |:.||||  ...||..:...|:::||..:            |..|
  Fly   120 SPPLKTPS-----SKYM---TAGHSLAVPVQSVPEFNSSSATSSESISSVSPSVDDIQSTDYNTD 176

  Fly   150 GVA------RVAQLALEPTVMDAL-----------PD--SDTEQVLGNLNSSAPWNLTLASAAAT 195
            ..:      ...|.:|..||::|.           |:  ......:|:.:.::.::.:.||:.|.
  Fly   177 NASENCMWPNALQYSLLQTVVEACQKKKHCKFHGSPEFYGQGSSGVGDSSGTSSYHSSTASSNAI 241

  Fly   196 NFENC-------------------SALFVNYTLPQTGLYCN--------------WTWDTLLCWP 227
            :.:.|                   |.:..:..:.|  |.||              ..::::.|  
  Fly   242 SNDPCPKRKKIVEVAYKCRPYEFRSKVACHNDVAQ--LECNPYSRIAVYSASFGRTEYESIQC-- 302

  Fly   228 PTPAGVLARMNCPGGF---------HGVDTRKFAIRKCEL---DGRWGS--RPNATEVNPPGWTD 278
            |.|.|| ....|...:         ||       .|:|.|   ...:||  :||:.......:| 
  Fly   303 PQPQGV-REETCLASYATETVMQICHG-------RRRCNLAADANTFGSPCQPNSRMYLKVVYT- 358

  Fly   279 YGPCYKPEIIRLMQQM-----GSKDF-----DAYID--IARRTRTLEIVGLCLSLFALIVSLLIF 331
               |...::::..:.:     .|:||     |.|.|  |.:.:..              :..|..
  Fly   359 ---CVPKQVLKENKALEVEADESEDFGGDLNDLYDDELIYKESEA--------------IPKLYS 406

  Fly   332 CTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLD-QFRRGNKEAATNTSLSVIEN-----TPYLC 390
            .|..::|.|.|:                 :|.|. .....|.::.||:|| |:|.     .|.:.
  Fly   407 NTTTTVRQNGTR-----------------SLGLGFSVNSANNQSITNSSL-VVEGDRSDVNPVMT 453

  Fly   391 EASYVLLEYARTAMFMWMFIEGLYLHNMVTVAVF 424
            .::.:.||..:..::.:: :..:.|..::::.:|
  Fly   454 HSADLSLEEDQERLYFYL-LALVSLGVLISIVIF 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:280888 18/86 (21%)
7tm_4 306..563 CDD:304433 19/125 (15%)
CG42402NP_001287642.1 Gal_Lectin <181..259 CDD:280328 11/77 (14%)
Gal_Lectin 277..359 CDD:280328 19/95 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462238
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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