DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdfr and Crhr2

DIOPT Version :10

Sequence 1:NP_001245501.1 Gene:Pdfr / 31234 FlyBaseID:FBgn0260753 Length:738 Species:Drosophila melanogaster
Sequence 2:NP_001426277.1 Gene:Crhr2 / 64680 RGDID:70547 Length:431 Species:Rattus norvegicus


Alignment Length:468 Identity:146/468 - (31%)
Similarity:209/468 - (44%) Gaps:72/468 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 AQLALEPTVMDALPDSDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWT 219
            |||.|  .:...||.....|....|.....|.|.......|...|.|..:         .|||.|
  Rat    10 AQLLL--CLYSLLPLLQVAQPGQALQDQPLWTLLEQYCHRTTTRNFSGPY---------SYCNTT 63

  Fly   220 WDTL-LCWPPTPAGVLARMNCPGGFHGV--DTRKFAIRKCELDGRWGSRPNATEVNPPGWTDYGP 281
            .|.: .|||.:..|.|....||..|:|:  :|.:.|.|:|..:|.|.||.|.:...|        
  Rat    64 LDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASRVNYSHCEP-------- 120

  Fly   282 CYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCLSLFALIVSLLIFCTFRSLRNNRTKIHK 346
                 |:...|    :.:|.:..||   ..:..:|.|:|:.||:.:.|:|...||:|..|..||.
  Rat   121 -----ILDDKQ----RKYDLHYRIA---LIINYLGHCVSVVALVAAFLLFLVLRSIRCLRNVIHW 173

  Fly   347 NLFVAMVLQVIIRLTLYLDQFRRGNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIE 411
            ||....:|:   .:|.:|.|.          ....|.|.....|.....:..|.....|.|||:|
  Rat   174 NLITTFILR---NITWFLLQL----------IDHEVHEGNEVWCRCVTTIFNYFVVTNFFWMFVE 225

  Fly   412 GLYLHNMVTVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNY---NLTPYY 473
            |.|||..:.:...........|..:|||:|..:...||...:.|.:.   :|.:..   :|..| 
  Rat   226 GCYLHTAIVMTYSTEHLRKWLFLFIGWCIPCPIIVAWAVGKLYYENE---QCWFGKEPGDLVDY- 286

  Fly   474 WILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRAAIVLLPLLGITNLLHQLAP 538
             |.:||.:.|:|:||.||.||:|:|:.|||.|..|:..|.||||:|.:|||||||||.:|..:.|
  Rat   287 -IYQGPIILVLLINFVFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNP 350

  Fly   539 LKTATNFAVWSYGTHFLTSFQGFFIALIYCFLNGEVRAVLLK-------------SLATQLSVRG 590
            .:...:..|:.|...||.||||||:::.|||.|||||:.|.|             .:|..:|:  
  Rat   351 GEDDLSQIVFIYFNSFLQSFQGFFVSVFYCFFNGEVRSALRKRWHRWQDHHALRVPVARAMSI-- 413

  Fly   591 HPEWAPKRASMYS 603
              ..:|.|.|.:|
  Rat   414 --PTSPTRISFHS 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdfrNP_001245501.1 HRM 213..272 CDD:397086 23/61 (38%)
7tmB1_PDFR 306..584 CDD:320389 99/293 (34%)
TM helix 1 308..333 CDD:320389 7/24 (29%)
TM helix 2 342..364 CDD:320389 6/21 (29%)
TM helix 3 391..418 CDD:320389 10/26 (38%)
TM helix 4 430..450 CDD:320389 6/19 (32%)
TM helix 5 469..498 CDD:320389 14/28 (50%)
TM helix 6 512..539 CDD:320389 16/26 (62%)
TM helix 7 546..571 CDD:320389 13/24 (54%)
Crhr2NP_001426277.1 None

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